Protein–RNA interactions for Protein: O60264

SMARCA5, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5, humanhuman

Predicted RBP Predictions only

Length 1,052 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA5O60264 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SMARCA5O60264 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMARCA5O60264 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC21.17■□□□□ 0.98
SMARCA5O60264 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SMARCA5O60264 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC21.17■□□□□ 0.98
SMARCA5O60264 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMARCA5O60264 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC21.17■□□□□ 0.98
SMARCA5O60264 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMARCA5O60264 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SMARCA5O60264 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC21.17■□□□□ 0.98
SMARCA5O60264 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC21.17■□□□□ 0.98
SMARCA5O60264 FLJ38576-201ENST00000623820 2459 ntBASIC21.17■□□□□ 0.98
SMARCA5O60264 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMARCA5O60264 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC21.17■□□□□ 0.98
SMARCA5O60264 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMARCA5O60264 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMARCA5O60264 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMARCA5O60264 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMARCA5O60264 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SMARCA5O60264 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
SMARCA5O60264 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMARCA5O60264 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMARCA5O60264 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMARCA5O60264 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMARCA5O60264 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMARCA5O60264 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SMARCA5O60264 AL121761.2-201ENST00000598007 1648 ntBASIC21.16■□□□□ 0.98
SMARCA5O60264 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SMARCA5O60264 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMARCA5O60264 AC004870.1-201ENST00000315132 882 ntBASIC21.16■□□□□ 0.98
SMARCA5O60264 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SMARCA5O60264 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC21.16■□□□□ 0.98
SMARCA5O60264 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC21.16■□□□□ 0.98
SMARCA5O60264 AP002469.2-201ENST00000531724 424 ntBASIC21.16■□□□□ 0.98
SMARCA5O60264 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC21.16■□□□□ 0.98
SMARCA5O60264 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC21.16■□□□□ 0.98
SMARCA5O60264 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC21.16■□□□□ 0.98
SMARCA5O60264 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC21.16■□□□□ 0.98
SMARCA5O60264 AC107918.4-202ENST00000641623 219 ntBASIC21.16■□□□□ 0.98
SMARCA5O60264 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMARCA5O60264 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
SMARCA5O60264 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC21.16■□□□□ 0.98
SMARCA5O60264 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SMARCA5O60264 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMARCA5O60264 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMARCA5O60264 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SMARCA5O60264 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMARCA5O60264 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SMARCA5O60264 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC21.15■□□□□ 0.98
SMARCA5O60264 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SMARCA5O60264 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC21.15■□□□□ 0.98
SMARCA5O60264 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SMARCA5O60264 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
SMARCA5O60264 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
SMARCA5O60264 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
SMARCA5O60264 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SMARCA5O60264 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC21.15■□□□□ 0.98
SMARCA5O60264 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC21.15■□□□□ 0.98
SMARCA5O60264 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SMARCA5O60264 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SMARCA5O60264 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SMARCA5O60264 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC21.15■□□□□ 0.98
SMARCA5O60264 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC21.15■□□□□ 0.98
SMARCA5O60264 CENPM-204ENST00000402420 688 ntTSL 5 BASIC21.15■□□□□ 0.98
SMARCA5O60264 PTCHD3P3-201ENST00000403073 906 ntBASIC21.15■□□□□ 0.98
SMARCA5O60264 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC21.15■□□□□ 0.98
SMARCA5O60264 AC009078.2-202ENST00000463353 338 ntBASIC21.15■□□□□ 0.98
SMARCA5O60264 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC21.15■□□□□ 0.98
SMARCA5O60264 OR7E14P-202ENST00000530490 1290 ntBASIC21.15■□□□□ 0.98
SMARCA5O60264 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC21.15■□□□□ 0.98
SMARCA5O60264 DUX4L17-201ENST00000557360 1267 ntBASIC21.15■□□□□ 0.98
SMARCA5O60264 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC21.15■□□□□ 0.98
SMARCA5O60264 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC21.15■□□□□ 0.98
SMARCA5O60264 CALM3-211ENST00000598871 561 ntTSL 4 BASIC21.15■□□□□ 0.98
SMARCA5O60264 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SMARCA5O60264 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SMARCA5O60264 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC21.15■□□□□ 0.98
SMARCA5O60264 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SMARCA5O60264 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SMARCA5O60264 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC21.15■□□□□ 0.98
SMARCA5O60264 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SMARCA5O60264 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
SMARCA5O60264 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC21.15■□□□□ 0.98
SMARCA5O60264 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SMARCA5O60264 PCDHB17P-201ENST00000539533 2393 ntBASIC21.15■□□□□ 0.98
SMARCA5O60264 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SMARCA5O60264 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SMARCA5O60264 AP002414.3-201ENST00000589352 1468 ntBASIC21.14■□□□□ 0.98
SMARCA5O60264 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC21.14■□□□□ 0.98
SMARCA5O60264 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
SMARCA5O60264 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
SMARCA5O60264 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SMARCA5O60264 AC243591.1-201ENST00000452967 1364 ntBASIC21.14■□□□□ 0.98
SMARCA5O60264 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
SMARCA5O60264 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SMARCA5O60264 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
SMARCA5O60264 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC21.14■□□□□ 0.97
SMARCA5O60264 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC21.14■□□□□ 0.97
SMARCA5O60264 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SMARCA5O60264 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms