Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
MSH4O15457 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
MSH4O15457 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC19.2■□□□□ 0.66
MSH4O15457 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
MSH4O15457 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC19.2■□□□□ 0.66
MSH4O15457 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC19.2■□□□□ 0.66
MSH4O15457 CALM1-205ENST00000553542 877 ntTSL 5 BASIC19.2■□□□□ 0.66
MSH4O15457 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
MSH4O15457 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC19.2■□□□□ 0.66
MSH4O15457 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC19.2■□□□□ 0.66
MSH4O15457 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
MSH4O15457 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
MSH4O15457 PC-214ENST00000628663 1470 ntTSL 5 BASIC19.2■□□□□ 0.66
MSH4O15457 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
MSH4O15457 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC19.2■□□□□ 0.66
MSH4O15457 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
MSH4O15457 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC19.2■□□□□ 0.66
MSH4O15457 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
MSH4O15457 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
MSH4O15457 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
MSH4O15457 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
MSH4O15457 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MSH4O15457 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
MSH4O15457 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MSH4O15457 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MSH4O15457 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MSH4O15457 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
MSH4O15457 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
MSH4O15457 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MSH4O15457 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
MSH4O15457 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
MSH4O15457 AC023274.1-201ENST00000418278 595 ntBASIC19.19■□□□□ 0.66
MSH4O15457 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
MSH4O15457 MAL2-202ENST00000531508 892 ntTSL 3 BASIC19.19■□□□□ 0.66
MSH4O15457 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC19.19■□□□□ 0.66
MSH4O15457 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MSH4O15457 AQP6-205ENST00000618286 829 ntTSL 5 BASIC19.19■□□□□ 0.66
MSH4O15457 AC092865.6-201ENST00000642101 219 ntBASIC19.19■□□□□ 0.66
MSH4O15457 FOS-208ENST00000555686 1496 ntTSL 2 BASIC19.19■□□□□ 0.66
MSH4O15457 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC19.19■□□□□ 0.66
MSH4O15457 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
MSH4O15457 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MSH4O15457 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
MSH4O15457 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MSH4O15457 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
MSH4O15457 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
MSH4O15457 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
MSH4O15457 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
MSH4O15457 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC19.19■□□□□ 0.66
MSH4O15457 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MSH4O15457 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC19.19■□□□□ 0.66
MSH4O15457 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC19.19■□□□□ 0.66
MSH4O15457 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
MSH4O15457 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MSH4O15457 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC19.18■□□□□ 0.66
MSH4O15457 AC060834.1-201ENST00000443027 2032 ntBASIC19.18■□□□□ 0.66
MSH4O15457 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
MSH4O15457 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
MSH4O15457 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
MSH4O15457 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
MSH4O15457 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC19.18■□□□□ 0.66
MSH4O15457 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
MSH4O15457 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC19.18■□□□□ 0.66
MSH4O15457 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC19.18■□□□□ 0.66
MSH4O15457 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
MSH4O15457 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
MSH4O15457 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
MSH4O15457 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
MSH4O15457 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC19.18■□□□□ 0.66
MSH4O15457 HNRNPA1P28-201ENST00000424481 961 ntBASIC19.18■□□□□ 0.66
MSH4O15457 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC19.18■□□□□ 0.66
MSH4O15457 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC19.18■□□□□ 0.66
MSH4O15457 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC19.18■□□□□ 0.66
MSH4O15457 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC19.18■□□□□ 0.66
MSH4O15457 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
MSH4O15457 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC19.18■□□□□ 0.66
MSH4O15457 AC040169.1-201ENST00000565382 521 ntBASIC19.18■□□□□ 0.66
MSH4O15457 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC19.18■□□□□ 0.66
MSH4O15457 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC19.18■□□□□ 0.66
MSH4O15457 AL513190.1-201ENST00000621254 727 ntBASIC19.18■□□□□ 0.66
MSH4O15457 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
MSH4O15457 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
MSH4O15457 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
MSH4O15457 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
MSH4O15457 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
MSH4O15457 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
MSH4O15457 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MSH4O15457 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC19.17■□□□□ 0.66
MSH4O15457 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MSH4O15457 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MSH4O15457 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
MSH4O15457 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC19.17■□□□□ 0.66
MSH4O15457 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MSH4O15457 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MSH4O15457 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC19.17■□□□□ 0.66
MSH4O15457 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC19.17■□□□□ 0.66
MSH4O15457 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC19.17■□□□□ 0.66
MSH4O15457 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
MSH4O15457 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
MSH4O15457 CD63-210ENST00000550776 870 ntTSL 5 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms