Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC15.06■□□□□ 0
NKX3-1Q99801 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC15.06■□□□□ 0
NKX3-1Q99801 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC15.06■□□□□ 0
NKX3-1Q99801 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC15.06■□□□□ 0
NKX3-1Q99801 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC15.06■□□□□ 0
NKX3-1Q99801 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
NKX3-1Q99801 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
NKX3-1Q99801 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
NKX3-1Q99801 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC15.06■□□□□ 0
NKX3-1Q99801 RNF152P1-201ENST00000397754 604 ntBASIC15.06■□□□□ 0
NKX3-1Q99801 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
NKX3-1Q99801 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
NKX3-1Q99801 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC15.06■□□□□ 0
NKX3-1Q99801 AC022616.7-201ENST00000525383 220 ntBASIC15.06■□□□□ 0
NKX3-1Q99801 ZNF444P1-201ENST00000559497 298 ntBASIC15.06■□□□□ 0
NKX3-1Q99801 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC15.06■□□□□ 0
NKX3-1Q99801 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC15.06■□□□□ 0
NKX3-1Q99801 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC15.06■□□□□ 0
NKX3-1Q99801 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC15.06■□□□□ 0
NKX3-1Q99801 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC15.06■□□□□ 0
NKX3-1Q99801 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
NKX3-1Q99801 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
NKX3-1Q99801 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC15.06■□□□□ 0
NKX3-1Q99801 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
NKX3-1Q99801 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
NKX3-1Q99801 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC15.06■□□□□ 0
NKX3-1Q99801 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
NKX3-1Q99801 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
NKX3-1Q99801 AC093525.9-201ENST00000624961 1746 ntBASIC15.06■□□□□ 0
NKX3-1Q99801 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC15.06■□□□□ 0
NKX3-1Q99801 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
NKX3-1Q99801 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
NKX3-1Q99801 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC15.06■□□□□ 0
NKX3-1Q99801 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
NKX3-1Q99801 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC15.05■□□□□ 0
NKX3-1Q99801 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC15.05■□□□□ 0
NKX3-1Q99801 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
NKX3-1Q99801 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ 0
NKX3-1Q99801 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
NKX3-1Q99801 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
NKX3-1Q99801 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
NKX3-1Q99801 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC15.05■□□□□ 0
NKX3-1Q99801 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC15.05■□□□□ 0
NKX3-1Q99801 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC15.05■□□□□ -0
NKX3-1Q99801 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ -0
NKX3-1Q99801 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
NKX3-1Q99801 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC15.05■□□□□ -0
NKX3-1Q99801 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC15.05■□□□□ -0
NKX3-1Q99801 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
NKX3-1Q99801 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC15.05■□□□□ -0
NKX3-1Q99801 AL359075.1-203ENST00000462729 1002 ntBASIC15.05■□□□□ -0
NKX3-1Q99801 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC15.05■□□□□ -0
NKX3-1Q99801 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC15.05■□□□□ -0
NKX3-1Q99801 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
NKX3-1Q99801 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC15.05■□□□□ -0
NKX3-1Q99801 RNF126P1-202ENST00000569893 925 ntBASIC15.05■□□□□ -0
NKX3-1Q99801 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC15.05■□□□□ -0
NKX3-1Q99801 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC15.05■□□□□ -0
NKX3-1Q99801 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
NKX3-1Q99801 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
NKX3-1Q99801 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
NKX3-1Q99801 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC15.05■□□□□ -0
NKX3-1Q99801 LINC02012-201ENST00000608206 1725 ntBASIC15.05■□□□□ -0
NKX3-1Q99801 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC15.05■□□□□ -0
NKX3-1Q99801 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
NKX3-1Q99801 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC15.05■□□□□ -0
NKX3-1Q99801 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
NKX3-1Q99801 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC15.05■□□□□ -0
NKX3-1Q99801 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
NKX3-1Q99801 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC15.05■□□□□ -0
NKX3-1Q99801 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
NKX3-1Q99801 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
NKX3-1Q99801 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC15.04■□□□□ -0
NKX3-1Q99801 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC15.04■□□□□ -0
NKX3-1Q99801 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -0
NKX3-1Q99801 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
NKX3-1Q99801 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC15.04■□□□□ -0
NKX3-1Q99801 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
NKX3-1Q99801 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC15.04■□□□□ -0
NKX3-1Q99801 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
NKX3-1Q99801 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
NKX3-1Q99801 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
NKX3-1Q99801 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
NKX3-1Q99801 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC15.04■□□□□ -0
NKX3-1Q99801 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
NKX3-1Q99801 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC15.04■□□□□ -0
NKX3-1Q99801 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
NKX3-1Q99801 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
NKX3-1Q99801 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
NKX3-1Q99801 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
NKX3-1Q99801 TSPY5P-201ENST00000426936 936 ntBASIC15.04■□□□□ -0
NKX3-1Q99801 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
NKX3-1Q99801 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC15.04■□□□□ -0
NKX3-1Q99801 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC15.04■□□□□ -0
NKX3-1Q99801 AL031432.5-201ENST00000641059 760 ntBASIC15.04■□□□□ -0
NKX3-1Q99801 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC15.04■□□□□ -0
NKX3-1Q99801 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
NKX3-1Q99801 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
NKX3-1Q99801 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC15.04■□□□□ -0
NKX3-1Q99801 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms