Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 AL135999.2-201ENST00000622438 1686 ntBASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 KRT18P1-202ENST00000452408 1331 ntBASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 ENSA-206ENST00000361631 725 ntTSL 2 BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 VENTXP7-201ENST00000475503 772 ntBASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 FAM86EP-206ENST00000510506 987 ntBASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLHC1Q8NHS4 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
CLHC1Q8NHS4 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLHC1Q8NHS4 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLHC1Q8NHS4 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC16.52■□□□□ 0.24
CLHC1Q8NHS4 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.52■□□□□ 0.24
CLHC1Q8NHS4 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.52■□□□□ 0.24
CLHC1Q8NHS4 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLHC1Q8NHS4 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CLHC1Q8NHS4 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC16.52■□□□□ 0.24
CLHC1Q8NHS4 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLHC1Q8NHS4 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC16.52■□□□□ 0.24
CLHC1Q8NHS4 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.52■□□□□ 0.24
CLHC1Q8NHS4 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC16.52■□□□□ 0.24
CLHC1Q8NHS4 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLHC1Q8NHS4 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CLHC1Q8NHS4 AC246785.2-201ENST00000432512 513 ntBASIC16.52■□□□□ 0.24
CLHC1Q8NHS4 NKTR-203ENST00000442970 646 ntTSL 2 BASIC16.52■□□□□ 0.24
CLHC1Q8NHS4 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC16.52■□□□□ 0.24
CLHC1Q8NHS4 STK19B-204ENST00000512515 211 ntBASIC16.52■□□□□ 0.24
CLHC1Q8NHS4 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CLHC1Q8NHS4 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC16.52■□□□□ 0.24
CLHC1Q8NHS4 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CLHC1Q8NHS4 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLHC1Q8NHS4 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLHC1Q8NHS4 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLHC1Q8NHS4 AL353593.2-201ENST00000602529 1483 ntBASIC16.52■□□□□ 0.23
CLHC1Q8NHS4 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC16.52■□□□□ 0.23
CLHC1Q8NHS4 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.52■□□□□ 0.23
CLHC1Q8NHS4 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CLHC1Q8NHS4 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC16.52■□□□□ 0.23
CLHC1Q8NHS4 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CLHC1Q8NHS4 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CLHC1Q8NHS4 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CLHC1Q8NHS4 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.52■□□□□ 0.23
CLHC1Q8NHS4 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CLHC1Q8NHS4 AC132938.5-201ENST00000624980 1813 ntBASIC16.52■□□□□ 0.23
CLHC1Q8NHS4 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CLHC1Q8NHS4 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 AC009336.1-201ENST00000608941 1553 ntBASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 AL139384.1-201ENST00000612143 3047 ntBASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLHC1Q8NHS4 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms