Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
RNF4P78317 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC15.91■□□□□ 0.14
RNF4P78317 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC15.91■□□□□ 0.14
RNF4P78317 AC108073.2-201ENST00000464002 357 ntBASIC15.91■□□□□ 0.14
RNF4P78317 PIN1-206ENST00000587625 878 ntTSL 2 BASIC15.91■□□□□ 0.14
RNF4P78317 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
RNF4P78317 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC15.91■□□□□ 0.14
RNF4P78317 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
RNF4P78317 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
RNF4P78317 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
RNF4P78317 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
RNF4P78317 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
RNF4P78317 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
RNF4P78317 AC005332.8-201ENST00000622750 2735 ntBASIC15.91■□□□□ 0.14
RNF4P78317 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
RNF4P78317 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
RNF4P78317 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
RNF4P78317 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC15.91■□□□□ 0.14
RNF4P78317 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
RNF4P78317 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
RNF4P78317 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
RNF4P78317 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC15.91■□□□□ 0.14
RNF4P78317 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
RNF4P78317 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC15.91■□□□□ 0.14
RNF4P78317 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
RNF4P78317 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
RNF4P78317 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
RNF4P78317 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC15.91■□□□□ 0.14
RNF4P78317 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
RNF4P78317 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
RNF4P78317 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC15.9■□□□□ 0.14
RNF4P78317 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC15.9■□□□□ 0.14
RNF4P78317 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
RNF4P78317 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
RNF4P78317 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
RNF4P78317 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC15.9■□□□□ 0.14
RNF4P78317 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
RNF4P78317 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
RNF4P78317 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
RNF4P78317 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
RNF4P78317 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
RNF4P78317 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC15.9■□□□□ 0.14
RNF4P78317 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
RNF4P78317 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC15.9■□□□□ 0.14
RNF4P78317 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
RNF4P78317 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC15.9■□□□□ 0.14
RNF4P78317 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
RNF4P78317 CAND2-206ENST00000626378 333 ntTSL 5 BASIC15.9■□□□□ 0.14
RNF4P78317 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
RNF4P78317 EGFEM1P-202ENST00000431685 1563 ntBASIC15.9■□□□□ 0.14
RNF4P78317 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
RNF4P78317 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
RNF4P78317 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC15.9■□□□□ 0.14
RNF4P78317 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
RNF4P78317 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
RNF4P78317 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
RNF4P78317 AC141586.5-201ENST00000624546 2050 ntBASIC15.9■□□□□ 0.14
RNF4P78317 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
RNF4P78317 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.14
RNF4P78317 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.14
RNF4P78317 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC15.89■□□□□ 0.13
RNF4P78317 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
RNF4P78317 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC15.89■□□□□ 0.13
RNF4P78317 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
RNF4P78317 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
RNF4P78317 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC15.89■□□□□ 0.13
RNF4P78317 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
RNF4P78317 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
RNF4P78317 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
RNF4P78317 MIR574-201ENST00000385209 96 ntBASIC15.89■□□□□ 0.13
RNF4P78317 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
RNF4P78317 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
RNF4P78317 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
RNF4P78317 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC15.89■□□□□ 0.13
RNF4P78317 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC15.89■□□□□ 0.13
RNF4P78317 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
RNF4P78317 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC15.89■□□□□ 0.13
RNF4P78317 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC15.89■□□□□ 0.13
RNF4P78317 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC15.89■□□□□ 0.13
RNF4P78317 TCAP-202ENST00000578283 583 ntTSL 5 BASIC15.89■□□□□ 0.13
RNF4P78317 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC15.89■□□□□ 0.13
RNF4P78317 AC004790.2-201ENST00000623588 572 ntBASIC15.89■□□□□ 0.13
RNF4P78317 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC15.89■□□□□ 0.13
RNF4P78317 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
RNF4P78317 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC15.89■□□□□ 0.13
RNF4P78317 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
RNF4P78317 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
RNF4P78317 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC15.89■□□□□ 0.13
RNF4P78317 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
RNF4P78317 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC15.89■□□□□ 0.13
RNF4P78317 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
RNF4P78317 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
RNF4P78317 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
RNF4P78317 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
RNF4P78317 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
RNF4P78317 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
RNF4P78317 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
RNF4P78317 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
RNF4P78317 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
RNF4P78317 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC15.89■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms