Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.45■□□□□ 0.22
MSX2P35548 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MSX2P35548 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
MSX2P35548 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MSX2P35548 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MSX2P35548 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
MSX2P35548 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
MSX2P35548 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
MSX2P35548 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC16.45■□□□□ 0.22
MSX2P35548 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
MSX2P35548 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC16.45■□□□□ 0.22
MSX2P35548 AC144831.1-201ENST00000573312 2656 ntBASIC16.44■□□□□ 0.22
MSX2P35548 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
MSX2P35548 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MSX2P35548 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MSX2P35548 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MSX2P35548 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MSX2P35548 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MSX2P35548 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC16.44■□□□□ 0.22
MSX2P35548 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MSX2P35548 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC16.44■□□□□ 0.22
MSX2P35548 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MSX2P35548 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MSX2P35548 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MSX2P35548 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC16.44■□□□□ 0.22
MSX2P35548 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC16.44■□□□□ 0.22
MSX2P35548 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
MSX2P35548 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC16.44■□□□□ 0.22
MSX2P35548 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC16.44■□□□□ 0.22
MSX2P35548 AC009154.2-201ENST00000621177 724 ntBASIC16.44■□□□□ 0.22
MSX2P35548 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
MSX2P35548 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MSX2P35548 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
MSX2P35548 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
MSX2P35548 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
MSX2P35548 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
MSX2P35548 NID2-208ENST00000617139 3827 ntTSL 5 BASIC16.44■□□□□ 0.22
MSX2P35548 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
MSX2P35548 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
MSX2P35548 GCK-202ENST00000345378 2421 ntTSL 2 BASIC16.44■□□□□ 0.22
MSX2P35548 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
MSX2P35548 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
MSX2P35548 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.44■□□□□ 0.22
MSX2P35548 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
MSX2P35548 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
MSX2P35548 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
MSX2P35548 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
MSX2P35548 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
MSX2P35548 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
MSX2P35548 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.43■□□□□ 0.22
MSX2P35548 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
MSX2P35548 STX3-203ENST00000529177 1571 ntTSL 2 BASIC16.43■□□□□ 0.22
MSX2P35548 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
MSX2P35548 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
MSX2P35548 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
MSX2P35548 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC16.43■□□□□ 0.22
MSX2P35548 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
MSX2P35548 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
MSX2P35548 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.43■□□□□ 0.22
MSX2P35548 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
MSX2P35548 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
MSX2P35548 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC16.43■□□□□ 0.22
MSX2P35548 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC16.43■□□□□ 0.22
MSX2P35548 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
MSX2P35548 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
MSX2P35548 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
MSX2P35548 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC16.43■□□□□ 0.22
MSX2P35548 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC16.43■□□□□ 0.22
MSX2P35548 AL158047.1-201ENST00000445918 881 ntBASIC16.43■□□□□ 0.22
MSX2P35548 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
MSX2P35548 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC16.43■□□□□ 0.22
MSX2P35548 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC16.43■□□□□ 0.22
MSX2P35548 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC16.43■□□□□ 0.22
MSX2P35548 C2orf69P3-201ENST00000565542 1120 ntBASIC16.43■□□□□ 0.22
MSX2P35548 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC16.43■□□□□ 0.22
MSX2P35548 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
MSX2P35548 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
MSX2P35548 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC16.43■□□□□ 0.22
MSX2P35548 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
MSX2P35548 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
MSX2P35548 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
MSX2P35548 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC16.43■□□□□ 0.22
MSX2P35548 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
MSX2P35548 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
MSX2P35548 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
MSX2P35548 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
MSX2P35548 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC16.43■□□□□ 0.22
MSX2P35548 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC16.43■□□□□ 0.22
MSX2P35548 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
MSX2P35548 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
MSX2P35548 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
MSX2P35548 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
MSX2P35548 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
MSX2P35548 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
MSX2P35548 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
MSX2P35548 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
MSX2P35548 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
MSX2P35548 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
MSX2P35548 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
MSX2P35548 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms