Protein–RNA interactions for Protein: Q9NRF8

CTPS2, CTP synthase 2, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTPS2Q9NRF8 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CTPS2Q9NRF8 AC116353.5-201ENST00000638148 1699 ntBASIC16.06■□□□□ 0.16
CTPS2Q9NRF8 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC16.06■□□□□ 0.16
CTPS2Q9NRF8 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
CTPS2Q9NRF8 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CTPS2Q9NRF8 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
CTPS2Q9NRF8 COX5BP2-201ENST00000392354 334 ntBASIC16.06■□□□□ 0.16
CTPS2Q9NRF8 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CTPS2Q9NRF8 LINC00265-3P-201ENST00000447588 903 ntBASIC16.06■□□□□ 0.16
CTPS2Q9NRF8 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CTPS2Q9NRF8 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC16.06■□□□□ 0.16
CTPS2Q9NRF8 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC16.06■□□□□ 0.16
CTPS2Q9NRF8 ABR-204ENST00000543210 1049 ntTSL 2 BASIC16.06■□□□□ 0.16
CTPS2Q9NRF8 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC16.06■□□□□ 0.16
CTPS2Q9NRF8 ABR-217ENST00000572441 563 ntTSL 4 BASIC16.06■□□□□ 0.16
CTPS2Q9NRF8 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC16.06■□□□□ 0.16
CTPS2Q9NRF8 MIR3180-1-201ENST00000580374 94 ntBASIC16.06■□□□□ 0.16
CTPS2Q9NRF8 MIR3180-3-201ENST00000584616 94 ntBASIC16.06■□□□□ 0.16
CTPS2Q9NRF8 IL11-204ENST00000590625 1028 ntTSL 2 BASIC16.06■□□□□ 0.16
CTPS2Q9NRF8 AL138831.2-201ENST00000606564 490 ntBASIC16.06■□□□□ 0.16
CTPS2Q9NRF8 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CTPS2Q9NRF8 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC16.06■□□□□ 0.16
CTPS2Q9NRF8 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
CTPS2Q9NRF8 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CTPS2Q9NRF8 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
CTPS2Q9NRF8 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CTPS2Q9NRF8 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
CTPS2Q9NRF8 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.06■□□□□ 0.16
CTPS2Q9NRF8 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CTPS2Q9NRF8 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
CTPS2Q9NRF8 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CTPS2Q9NRF8 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CTPS2Q9NRF8 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 PON3-205ENST00000451904 1053 ntTSL 3 BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 AC002558.1-201ENST00000488906 803 ntBASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 AC092119.3-201ENST00000612618 583 ntBASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CTPS2Q9NRF8 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CTPS2Q9NRF8 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CTPS2Q9NRF8 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC16.04■□□□□ 0.16
CTPS2Q9NRF8 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CTPS2Q9NRF8 AGGF1P2-201ENST00000426656 2106 ntBASIC16.04■□□□□ 0.16
CTPS2Q9NRF8 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CTPS2Q9NRF8 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC16.04■□□□□ 0.16
CTPS2Q9NRF8 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CTPS2Q9NRF8 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CTPS2Q9NRF8 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CTPS2Q9NRF8 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CTPS2Q9NRF8 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC16.04■□□□□ 0.16
CTPS2Q9NRF8 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CTPS2Q9NRF8 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.04■□□□□ 0.16
CTPS2Q9NRF8 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.04■□□□□ 0.16
CTPS2Q9NRF8 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.04■□□□□ 0.16
CTPS2Q9NRF8 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CTPS2Q9NRF8 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CTPS2Q9NRF8 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
CTPS2Q9NRF8 UPK3BP1-201ENST00000428678 509 ntBASIC16.04■□□□□ 0.16
CTPS2Q9NRF8 ATP5G2P1-201ENST00000433580 426 ntBASIC16.04■□□□□ 0.16
CTPS2Q9NRF8 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms