Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
RAE1P78406 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.32■□□□□ 0.2
RAE1P78406 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RAE1P78406 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RAE1P78406 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RAE1P78406 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RAE1P78406 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RAE1P78406 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC16.31■□□□□ 0.2
RAE1P78406 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RAE1P78406 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC16.31■□□□□ 0.2
RAE1P78406 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
RAE1P78406 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC16.31■□□□□ 0.2
RAE1P78406 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RAE1P78406 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RAE1P78406 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC16.31■□□□□ 0.2
RAE1P78406 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
RAE1P78406 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RAE1P78406 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RAE1P78406 AC092171.3-201ENST00000610122 2651 ntBASIC16.31■□□□□ 0.2
RAE1P78406 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RAE1P78406 AL590787.1-201ENST00000568856 1315 ntBASIC16.31■□□□□ 0.2
RAE1P78406 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RAE1P78406 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RAE1P78406 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
RAE1P78406 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
RAE1P78406 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
RAE1P78406 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RAE1P78406 TSPY19P-201ENST00000418461 509 ntBASIC16.31■□□□□ 0.2
RAE1P78406 TSPY18P-201ENST00000441642 509 ntBASIC16.31■□□□□ 0.2
RAE1P78406 KRT18P31-201ENST00000506277 1292 ntBASIC16.31■□□□□ 0.2
RAE1P78406 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC16.31■□□□□ 0.2
RAE1P78406 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC16.31■□□□□ 0.2
RAE1P78406 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RAE1P78406 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC16.31■□□□□ 0.2
RAE1P78406 NKAPP1-205ENST00000585790 367 ntBASIC16.31■□□□□ 0.2
RAE1P78406 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RAE1P78406 AC064862.7-201ENST00000604520 867 ntBASIC16.31■□□□□ 0.2
RAE1P78406 AL353135.1-201ENST00000606729 504 ntBASIC16.31■□□□□ 0.2
RAE1P78406 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC16.31■□□□□ 0.2
RAE1P78406 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RAE1P78406 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RAE1P78406 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
RAE1P78406 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RAE1P78406 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.31■□□□□ 0.2
RAE1P78406 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.31■□□□□ 0.2
RAE1P78406 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.31■□□□□ 0.2
RAE1P78406 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RAE1P78406 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
RAE1P78406 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RAE1P78406 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RAE1P78406 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.3■□□□□ 0.2
RAE1P78406 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RAE1P78406 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RAE1P78406 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RAE1P78406 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.3■□□□□ 0.2
RAE1P78406 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RAE1P78406 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC16.3■□□□□ 0.2
RAE1P78406 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC16.3■□□□□ 0.2
RAE1P78406 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RAE1P78406 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RAE1P78406 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
RAE1P78406 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
RAE1P78406 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RAE1P78406 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
RAE1P78406 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
RAE1P78406 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RAE1P78406 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
RAE1P78406 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RAE1P78406 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RAE1P78406 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RAE1P78406 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RAE1P78406 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RAE1P78406 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RAE1P78406 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC16.3■□□□□ 0.2
RAE1P78406 AP002414.1-201ENST00000391405 1147 ntBASIC16.3■□□□□ 0.2
RAE1P78406 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RAE1P78406 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC16.3■□□□□ 0.2
RAE1P78406 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC16.3■□□□□ 0.2
RAE1P78406 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC16.3■□□□□ 0.2
RAE1P78406 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC16.3■□□□□ 0.2
RAE1P78406 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RAE1P78406 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
RAE1P78406 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
RAE1P78406 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RAE1P78406 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RAE1P78406 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RAE1P78406 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RAE1P78406 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
RAE1P78406 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC16.3■□□□□ 0.2
RAE1P78406 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RAE1P78406 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
RAE1P78406 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
RAE1P78406 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RAE1P78406 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
RAE1P78406 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC16.29■□□□□ 0.2
RAE1P78406 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.29■□□□□ 0.2
RAE1P78406 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RAE1P78406 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RAE1P78406 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
RAE1P78406 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 149.3 ms