Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC13.39□□□□□ -0.27
CXCL1P09341 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC13.39□□□□□ -0.27
CXCL1P09341 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC13.39□□□□□ -0.27
CXCL1P09341 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC13.39□□□□□ -0.27
CXCL1P09341 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC13.39□□□□□ -0.27
CXCL1P09341 AC022532.1-201ENST00000624563 1728 ntBASIC13.39□□□□□ -0.27
CXCL1P09341 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CXCL1P09341 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CXCL1P09341 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CXCL1P09341 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC13.39□□□□□ -0.27
CXCL1P09341 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CXCL1P09341 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CXCL1P09341 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CXCL1P09341 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC13.39□□□□□ -0.27
CXCL1P09341 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC13.39□□□□□ -0.27
CXCL1P09341 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC13.39□□□□□ -0.27
CXCL1P09341 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CXCL1P09341 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC13.39□□□□□ -0.27
CXCL1P09341 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
CXCL1P09341 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC13.39□□□□□ -0.27
CXCL1P09341 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CXCL1P09341 CABP2-204ENST00000636477 941 ntTSL 5 BASIC13.39□□□□□ -0.27
CXCL1P09341 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
CXCL1P09341 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC13.39□□□□□ -0.27
CXCL1P09341 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
CXCL1P09341 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
CXCL1P09341 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
CXCL1P09341 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CXCL1P09341 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
CXCL1P09341 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CXCL1P09341 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CXCL1P09341 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC13.39□□□□□ -0.27
CXCL1P09341 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
CXCL1P09341 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CXCL1P09341 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CXCL1P09341 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CXCL1P09341 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CXCL1P09341 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC13.39□□□□□ -0.27
CXCL1P09341 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC13.39□□□□□ -0.27
CXCL1P09341 LINC02012-201ENST00000608206 1725 ntBASIC13.39□□□□□ -0.27
CXCL1P09341 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CXCL1P09341 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
CXCL1P09341 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC13.39□□□□□ -0.27
CXCL1P09341 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
CXCL1P09341 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CXCL1P09341 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
CXCL1P09341 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CXCL1P09341 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC13.38□□□□□ -0.27
CXCL1P09341 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
CXCL1P09341 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
CXCL1P09341 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CXCL1P09341 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CXCL1P09341 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CXCL1P09341 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
CXCL1P09341 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CXCL1P09341 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
CXCL1P09341 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CXCL1P09341 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
CXCL1P09341 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CXCL1P09341 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CXCL1P09341 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CXCL1P09341 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CXCL1P09341 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CXCL1P09341 RPS2P4-201ENST00000476944 856 ntBASIC13.38□□□□□ -0.27
CXCL1P09341 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC13.38□□□□□ -0.27
CXCL1P09341 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC13.38□□□□□ -0.27
CXCL1P09341 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC13.38□□□□□ -0.27
CXCL1P09341 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC13.38□□□□□ -0.27
CXCL1P09341 MIR3180-5-201ENST00000583743 153 ntBASIC13.38□□□□□ -0.27
CXCL1P09341 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC13.38□□□□□ -0.27
CXCL1P09341 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC13.38□□□□□ -0.27
CXCL1P09341 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC13.38□□□□□ -0.27
CXCL1P09341 AC008622.2-201ENST00000617006 1229 ntBASIC13.38□□□□□ -0.27
CXCL1P09341 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC13.38□□□□□ -0.27
CXCL1P09341 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CXCL1P09341 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CXCL1P09341 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC13.38□□□□□ -0.27
CXCL1P09341 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC13.38□□□□□ -0.27
CXCL1P09341 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
CXCL1P09341 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CXCL1P09341 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CXCL1P09341 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CXCL1P09341 CYP51A1P1-201ENST00000492267 1507 ntBASIC13.38□□□□□ -0.27
CXCL1P09341 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
CXCL1P09341 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC13.38□□□□□ -0.27
CXCL1P09341 KRT8P9-201ENST00000558927 1449 ntBASIC13.38□□□□□ -0.27
CXCL1P09341 HOXB1-202ENST00000577092 1414 ntBASIC13.38□□□□□ -0.27
CXCL1P09341 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC13.38□□□□□ -0.27
CXCL1P09341 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CXCL1P09341 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC13.38□□□□□ -0.27
CXCL1P09341 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
CXCL1P09341 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
CXCL1P09341 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
CXCL1P09341 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
CXCL1P09341 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CXCL1P09341 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CXCL1P09341 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CXCL1P09341 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC13.37□□□□□ -0.27
CXCL1P09341 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC13.37□□□□□ -0.27
CXCL1P09341 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms