Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
LIME1Q9H400 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC21.3■■□□□ 1
LIME1Q9H400 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC21.3■■□□□ 1
LIME1Q9H400 GUSBP5-201ENST00000418136 578 ntBASIC21.3■■□□□ 1
LIME1Q9H400 OR2A1-AS1-204ENST00000470435 602 ntBASIC21.3■■□□□ 1
LIME1Q9H400 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC21.3■■□□□ 1
LIME1Q9H400 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
LIME1Q9H400 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
LIME1Q9H400 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC21.29■■□□□ 1
LIME1Q9H400 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC21.29■■□□□ 1
LIME1Q9H400 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
LIME1Q9H400 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC21.29■■□□□ 1
LIME1Q9H400 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
LIME1Q9H400 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC21.29■■□□□ 1
LIME1Q9H400 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC21.28■■□□□ 1
LIME1Q9H400 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
LIME1Q9H400 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
LIME1Q9H400 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC21.28■■□□□ 1
LIME1Q9H400 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC21.28■■□□□ 1
LIME1Q9H400 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
LIME1Q9H400 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC21.28■■□□□ 1
LIME1Q9H400 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
LIME1Q9H400 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC21.27■■□□□ 1
LIME1Q9H400 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC21.27■■□□□ 1
LIME1Q9H400 PKM-203ENST00000389093 2279 ntTSL 5 BASIC21.27■■□□□ 1
LIME1Q9H400 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
LIME1Q9H400 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LIME1Q9H400 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC21.27■■□□□ 1
LIME1Q9H400 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
LIME1Q9H400 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LIME1Q9H400 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC21.26■□□□□ 0.99
LIME1Q9H400 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC21.26■□□□□ 0.99
LIME1Q9H400 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC21.26■□□□□ 0.99
LIME1Q9H400 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
LIME1Q9H400 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC21.26■□□□□ 0.99
LIME1Q9H400 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LIME1Q9H400 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LIME1Q9H400 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LIME1Q9H400 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
LIME1Q9H400 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
LIME1Q9H400 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC21.24■□□□□ 0.99
LIME1Q9H400 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
LIME1Q9H400 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC21.24■□□□□ 0.99
LIME1Q9H400 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC21.24■□□□□ 0.99
LIME1Q9H400 AC018755.3-202ENST00000596210 929 ntBASIC21.24■□□□□ 0.99
LIME1Q9H400 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC21.24■□□□□ 0.99
LIME1Q9H400 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
LIME1Q9H400 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC21.24■□□□□ 0.99
LIME1Q9H400 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC21.24■□□□□ 0.99
LIME1Q9H400 HYI-210ENST00000486909 905 ntTSL 5 BASIC21.23■□□□□ 0.99
LIME1Q9H400 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC21.23■□□□□ 0.99
LIME1Q9H400 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC21.23■□□□□ 0.99
LIME1Q9H400 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC21.23■□□□□ 0.99
LIME1Q9H400 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LIME1Q9H400 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LIME1Q9H400 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LIME1Q9H400 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LIME1Q9H400 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC21.22■□□□□ 0.99
LIME1Q9H400 PFN2-211ENST00000489155 636 ntTSL 4 BASIC21.22■□□□□ 0.99
LIME1Q9H400 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC21.22■□□□□ 0.99
LIME1Q9H400 MIR3960-201ENST00000583311 91 ntBASIC21.22■□□□□ 0.99
LIME1Q9H400 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIME1Q9H400 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIME1Q9H400 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIME1Q9H400 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIME1Q9H400 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIME1Q9H400 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC21.21■□□□□ 0.99
LIME1Q9H400 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
LIME1Q9H400 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIME1Q9H400 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIME1Q9H400 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
LIME1Q9H400 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIME1Q9H400 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC21.2■□□□□ 0.98
LIME1Q9H400 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIME1Q9H400 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIME1Q9H400 AC103724.3-201ENST00000564481 992 ntBASIC21.2■□□□□ 0.98
LIME1Q9H400 MIR4508-201ENST00000584178 70 ntBASIC21.2■□□□□ 0.98
LIME1Q9H400 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
LIME1Q9H400 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIME1Q9H400 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIME1Q9H400 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC21.19■□□□□ 0.98
LIME1Q9H400 AL356441.2-201ENST00000443009 864 ntBASIC21.19■□□□□ 0.98
LIME1Q9H400 PRTG-204ENST00000561292 833 ntTSL 3 BASIC21.19■□□□□ 0.98
LIME1Q9H400 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC21.19■□□□□ 0.98
LIME1Q9H400 AC135731.1-201ENST00000569415 2548 ntBASIC21.19■□□□□ 0.98
LIME1Q9H400 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC21.18■□□□□ 0.98
LIME1Q9H400 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC21.18■□□□□ 0.98
LIME1Q9H400 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC21.18■□□□□ 0.98
LIME1Q9H400 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC21.18■□□□□ 0.98
LIME1Q9H400 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC21.18■□□□□ 0.98
LIME1Q9H400 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC21.18■□□□□ 0.98
LIME1Q9H400 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LIME1Q9H400 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LIME1Q9H400 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
LIME1Q9H400 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC21.17■□□□□ 0.98
LIME1Q9H400 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC21.17■□□□□ 0.98
LIME1Q9H400 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC21.17■□□□□ 0.98
LIME1Q9H400 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
LIME1Q9H400 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
LIME1Q9H400 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 12.9 ms