Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC24.19■■□□□ 1.46
CFAP54Q96N23 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC24.19■■□□□ 1.46
CFAP54Q96N23 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
CFAP54Q96N23 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
CFAP54Q96N23 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
CFAP54Q96N23 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC24.18■■□□□ 1.46
CFAP54Q96N23 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
CFAP54Q96N23 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
CFAP54Q96N23 AL512631.2-201ENST00000604634 923 ntBASIC24.18■■□□□ 1.46
CFAP54Q96N23 PLD4-205ENST00000553861 667 ntTSL 2 BASIC24.17■■□□□ 1.46
CFAP54Q96N23 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
CFAP54Q96N23 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC24.17■■□□□ 1.46
CFAP54Q96N23 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
CFAP54Q96N23 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
CFAP54Q96N23 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC24.16■■□□□ 1.46
CFAP54Q96N23 QDPR-206ENST00000508623 601 ntTSL 3 BASIC24.16■■□□□ 1.46
CFAP54Q96N23 RARRES2P11-201ENST00000635158 484 ntBASIC24.16■■□□□ 1.46
CFAP54Q96N23 AC021242.3-201ENST00000607598 1377 ntBASIC24.16■■□□□ 1.46
CFAP54Q96N23 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC24.15■■□□□ 1.46
CFAP54Q96N23 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC24.15■■□□□ 1.46
CFAP54Q96N23 AC092028.1-203ENST00000608262 953 ntBASIC24.15■■□□□ 1.46
CFAP54Q96N23 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
CFAP54Q96N23 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC24.15■■□□□ 1.46
CFAP54Q96N23 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC24.15■■□□□ 1.46
CFAP54Q96N23 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC24.15■■□□□ 1.46
CFAP54Q96N23 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
CFAP54Q96N23 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC24.14■■□□□ 1.46
CFAP54Q96N23 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
CFAP54Q96N23 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
CFAP54Q96N23 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
CFAP54Q96N23 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
CFAP54Q96N23 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
CFAP54Q96N23 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC24.14■■□□□ 1.45
CFAP54Q96N23 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC24.14■■□□□ 1.45
CFAP54Q96N23 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC24.13■■□□□ 1.45
CFAP54Q96N23 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
CFAP54Q96N23 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
CFAP54Q96N23 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC24.13■■□□□ 1.45
CFAP54Q96N23 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC24.12■■□□□ 1.45
CFAP54Q96N23 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC24.12■■□□□ 1.45
CFAP54Q96N23 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC24.12■■□□□ 1.45
CFAP54Q96N23 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
CFAP54Q96N23 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC24.12■■□□□ 1.45
CFAP54Q96N23 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC24.12■■□□□ 1.45
CFAP54Q96N23 AC100797.4-201ENST00000631653 1827 ntBASIC24.12■■□□□ 1.45
CFAP54Q96N23 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC24.1■■□□□ 1.45
CFAP54Q96N23 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
CFAP54Q96N23 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
CFAP54Q96N23 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC24.1■■□□□ 1.45
CFAP54Q96N23 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC24.1■■□□□ 1.45
CFAP54Q96N23 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC24.1■■□□□ 1.45
CFAP54Q96N23 MEST-211ENST00000437945 1455 ntTSL 5 BASIC24.1■■□□□ 1.45
CFAP54Q96N23 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC24.1■■□□□ 1.45
CFAP54Q96N23 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC24.1■■□□□ 1.45
CFAP54Q96N23 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC24.1■■□□□ 1.45
CFAP54Q96N23 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
CFAP54Q96N23 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC24.09■■□□□ 1.45
CFAP54Q96N23 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC24.09■■□□□ 1.45
CFAP54Q96N23 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
CFAP54Q96N23 AL135925.1-201ENST00000605920 1701 ntBASIC24.09■■□□□ 1.45
CFAP54Q96N23 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
CFAP54Q96N23 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC24.09■■□□□ 1.45
CFAP54Q96N23 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
CFAP54Q96N23 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
CFAP54Q96N23 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC24.09■■□□□ 1.45
CFAP54Q96N23 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC24.08■■□□□ 1.45
CFAP54Q96N23 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC24.08■■□□□ 1.45
CFAP54Q96N23 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
CFAP54Q96N23 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC24.08■■□□□ 1.45
CFAP54Q96N23 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
CFAP54Q96N23 GLI3-203ENST00000437480 451 ntTSL 2 BASIC24.08■■□□□ 1.45
CFAP54Q96N23 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
CFAP54Q96N23 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC24.07■■□□□ 1.44
CFAP54Q96N23 AC137630.3-201ENST00000607245 391 ntBASIC24.07■■□□□ 1.44
CFAP54Q96N23 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC24.07■■□□□ 1.44
CFAP54Q96N23 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
CFAP54Q96N23 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC24.07■■□□□ 1.44
CFAP54Q96N23 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC24.07■■□□□ 1.44
CFAP54Q96N23 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC24.07■■□□□ 1.44
CFAP54Q96N23 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
CFAP54Q96N23 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
CFAP54Q96N23 ST7-AS1-201ENST00000456775 1889 ntBASIC24.05■■□□□ 1.44
CFAP54Q96N23 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
CFAP54Q96N23 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
CFAP54Q96N23 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
CFAP54Q96N23 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC24.05■■□□□ 1.44
CFAP54Q96N23 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
CFAP54Q96N23 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC24.05■■□□□ 1.44
CFAP54Q96N23 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
CFAP54Q96N23 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC24.04■■□□□ 1.44
CFAP54Q96N23 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC24.04■■□□□ 1.44
CFAP54Q96N23 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC24.04■■□□□ 1.44
CFAP54Q96N23 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
CFAP54Q96N23 RPS2P7-201ENST00000447334 885 ntBASIC24.03■■□□□ 1.44
CFAP54Q96N23 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
CFAP54Q96N23 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC24.03■■□□□ 1.44
CFAP54Q96N23 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC24.03■■□□□ 1.44
CFAP54Q96N23 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC24.03■■□□□ 1.44
CFAP54Q96N23 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
CFAP54Q96N23 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC24.02■■□□□ 1.44
Retrieved 100 of 98,524 protein–RNA pairs in 11.7 ms