Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
CPNE4Q96A23 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
CPNE4Q96A23 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CPNE4Q96A23 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CPNE4Q96A23 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CPNE4Q96A23 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CPNE4Q96A23 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CPNE4Q96A23 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CPNE4Q96A23 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CPNE4Q96A23 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CPNE4Q96A23 AC012354.3-201ENST00000623734 483 ntBASIC21.69■■□□□ 1.06
CPNE4Q96A23 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CPNE4Q96A23 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC21.69■■□□□ 1.06
CPNE4Q96A23 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CPNE4Q96A23 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CPNE4Q96A23 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CPNE4Q96A23 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
CPNE4Q96A23 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CPNE4Q96A23 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CPNE4Q96A23 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CPNE4Q96A23 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CPNE4Q96A23 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC21.67■■□□□ 1.06
CPNE4Q96A23 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC21.67■■□□□ 1.06
CPNE4Q96A23 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC21.67■■□□□ 1.06
CPNE4Q96A23 AC129492.7-201ENST00000622992 756 ntBASIC21.67■■□□□ 1.06
CPNE4Q96A23 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC21.66■■□□□ 1.06
CPNE4Q96A23 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CPNE4Q96A23 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CPNE4Q96A23 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CPNE4Q96A23 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CPNE4Q96A23 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC21.66■■□□□ 1.06
CPNE4Q96A23 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC21.66■■□□□ 1.06
CPNE4Q96A23 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC21.65■■□□□ 1.06
CPNE4Q96A23 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CPNE4Q96A23 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
CPNE4Q96A23 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC21.65■■□□□ 1.06
CPNE4Q96A23 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CPNE4Q96A23 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CPNE4Q96A23 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CPNE4Q96A23 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC21.64■■□□□ 1.06
CPNE4Q96A23 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CPNE4Q96A23 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
CPNE4Q96A23 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC21.64■■□□□ 1.05
CPNE4Q96A23 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CPNE4Q96A23 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CPNE4Q96A23 AC018755.3-202ENST00000596210 929 ntBASIC21.63■■□□□ 1.05
CPNE4Q96A23 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CPNE4Q96A23 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
CPNE4Q96A23 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC21.63■■□□□ 1.05
CPNE4Q96A23 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
CPNE4Q96A23 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC21.63■■□□□ 1.05
CPNE4Q96A23 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
CPNE4Q96A23 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CPNE4Q96A23 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CPNE4Q96A23 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CPNE4Q96A23 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CPNE4Q96A23 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CPNE4Q96A23 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
CPNE4Q96A23 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC21.61■■□□□ 1.05
CPNE4Q96A23 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC21.61■■□□□ 1.05
CPNE4Q96A23 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CPNE4Q96A23 DUX4L9-201ENST00000449051 1259 ntBASIC21.61■■□□□ 1.05
CPNE4Q96A23 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CPNE4Q96A23 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
CPNE4Q96A23 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CPNE4Q96A23 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CPNE4Q96A23 TSPY13P-201ENST00000338964 914 ntBASIC21.6■■□□□ 1.05
CPNE4Q96A23 ATP5G2P3-201ENST00000429083 425 ntBASIC21.6■■□□□ 1.05
CPNE4Q96A23 MIR6765-201ENST00000614092 87 ntBASIC21.6■■□□□ 1.05
CPNE4Q96A23 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CPNE4Q96A23 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC21.6■■□□□ 1.05
CPNE4Q96A23 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
CPNE4Q96A23 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CPNE4Q96A23 KRT18P10-201ENST00000388836 1287 ntBASIC21.59■■□□□ 1.05
CPNE4Q96A23 AC004987.1-201ENST00000428627 508 ntBASIC21.59■■□□□ 1.05
CPNE4Q96A23 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC21.59■■□□□ 1.05
CPNE4Q96A23 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
CPNE4Q96A23 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CPNE4Q96A23 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC21.58■■□□□ 1.05
CPNE4Q96A23 SPCS2P3-201ENST00000500401 656 ntBASIC21.58■■□□□ 1.05
CPNE4Q96A23 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC21.58■■□□□ 1.04
CPNE4Q96A23 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CPNE4Q96A23 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CPNE4Q96A23 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC21.57■■□□□ 1.04
CPNE4Q96A23 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CPNE4Q96A23 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CPNE4Q96A23 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CPNE4Q96A23 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC21.56■■□□□ 1.04
CPNE4Q96A23 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC21.56■■□□□ 1.04
CPNE4Q96A23 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CPNE4Q96A23 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CPNE4Q96A23 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC21.56■■□□□ 1.04
CPNE4Q96A23 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
CPNE4Q96A23 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CPNE4Q96A23 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CPNE4Q96A23 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC21.55■■□□□ 1.04
CPNE4Q96A23 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CPNE4Q96A23 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC21.55■■□□□ 1.04
CPNE4Q96A23 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
CPNE4Q96A23 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms