Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
USP48Q86UV5 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
USP48Q86UV5 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC29.73■■■□□ 2.35
USP48Q86UV5 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC29.73■■■□□ 2.35
USP48Q86UV5 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC29.73■■■□□ 2.35
USP48Q86UV5 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC29.72■■■□□ 2.35
USP48Q86UV5 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC29.72■■■□□ 2.35
USP48Q86UV5 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
USP48Q86UV5 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC29.72■■■□□ 2.35
USP48Q86UV5 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC29.72■■■□□ 2.35
USP48Q86UV5 IDNK-201ENST00000376417 511 ntTSL 5 BASIC29.72■■■□□ 2.35
USP48Q86UV5 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
USP48Q86UV5 AL031848.2-201ENST00000607670 837 ntBASIC29.72■■■□□ 2.35
USP48Q86UV5 BX255925.1-201ENST00000566954 1854 ntBASIC29.72■■■□□ 2.35
USP48Q86UV5 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC29.71■■■□□ 2.35
USP48Q86UV5 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC29.71■■■□□ 2.35
USP48Q86UV5 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC29.71■■■□□ 2.35
USP48Q86UV5 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
USP48Q86UV5 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC29.71■■■□□ 2.35
USP48Q86UV5 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC29.7■■■□□ 2.35
USP48Q86UV5 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC29.7■■■□□ 2.35
USP48Q86UV5 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC29.7■■■□□ 2.34
USP48Q86UV5 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC29.7■■■□□ 2.34
USP48Q86UV5 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC29.69■■■□□ 2.34
USP48Q86UV5 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC29.69■■■□□ 2.34
USP48Q86UV5 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC29.69■■■□□ 2.34
USP48Q86UV5 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC29.69■■■□□ 2.34
USP48Q86UV5 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC29.68■■■□□ 2.34
USP48Q86UV5 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC29.68■■■□□ 2.34
USP48Q86UV5 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
USP48Q86UV5 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC29.68■■■□□ 2.34
USP48Q86UV5 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC29.67■■■□□ 2.34
USP48Q86UV5 PROC-203ENST00000409048 1586 ntTSL 5 BASIC29.67■■■□□ 2.34
USP48Q86UV5 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
USP48Q86UV5 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC29.67■■■□□ 2.34
USP48Q86UV5 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC29.67■■■□□ 2.34
USP48Q86UV5 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
USP48Q86UV5 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
USP48Q86UV5 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC29.66■■■□□ 2.34
USP48Q86UV5 IDNK-203ENST00000405990 629 ntTSL 2 BASIC29.66■■■□□ 2.34
USP48Q86UV5 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC29.66■■■□□ 2.34
USP48Q86UV5 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
USP48Q86UV5 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
USP48Q86UV5 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC29.65■■■□□ 2.34
USP48Q86UV5 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC29.65■■■□□ 2.34
USP48Q86UV5 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC29.65■■■□□ 2.34
USP48Q86UV5 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
USP48Q86UV5 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC29.65■■■□□ 2.34
USP48Q86UV5 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC29.64■■■□□ 2.34
USP48Q86UV5 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC29.64■■■□□ 2.34
USP48Q86UV5 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
USP48Q86UV5 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC29.64■■■□□ 2.34
USP48Q86UV5 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
USP48Q86UV5 AC239859.2-201ENST00000444165 318 ntBASIC29.63■■■□□ 2.33
USP48Q86UV5 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC29.63■■■□□ 2.33
USP48Q86UV5 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC29.62■■■□□ 2.33
USP48Q86UV5 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC29.62■■■□□ 2.33
USP48Q86UV5 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC29.62■■■□□ 2.33
USP48Q86UV5 CREM-210ENST00000374721 2020 ntTSL 5 BASIC29.61■■■□□ 2.33
USP48Q86UV5 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
USP48Q86UV5 MTX2-204ENST00000443241 799 ntTSL 3 BASIC29.61■■■□□ 2.33
USP48Q86UV5 RNF146-205ENST00000477776 762 ntTSL 3 BASIC29.61■■■□□ 2.33
USP48Q86UV5 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC29.61■■■□□ 2.33
USP48Q86UV5 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC29.61■■■□□ 2.33
USP48Q86UV5 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC29.6■■■□□ 2.33
USP48Q86UV5 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
USP48Q86UV5 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC29.59■■■□□ 2.33
USP48Q86UV5 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC29.59■■■□□ 2.33
USP48Q86UV5 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC29.59■■■□□ 2.33
USP48Q86UV5 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
USP48Q86UV5 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC29.58■■■□□ 2.33
USP48Q86UV5 SHF-207ENST00000560540 2062 ntTSL 5 BASIC29.58■■■□□ 2.33
USP48Q86UV5 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC29.57■■■□□ 2.32
USP48Q86UV5 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
USP48Q86UV5 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC29.57■■■□□ 2.32
USP48Q86UV5 AC008406.3-201ENST00000620001 1374 ntBASIC29.57■■■□□ 2.32
USP48Q86UV5 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC29.57■■■□□ 2.32
USP48Q86UV5 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC29.57■■■□□ 2.32
USP48Q86UV5 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC29.56■■■□□ 2.32
USP48Q86UV5 LSM7-203ENST00000585409 512 ntTSL 2 BASIC29.56■■■□□ 2.32
USP48Q86UV5 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
USP48Q86UV5 SHF-208ENST00000560734 1731 ntTSL 3 BASIC29.56■■■□□ 2.32
USP48Q86UV5 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
USP48Q86UV5 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC29.56■■■□□ 2.32
USP48Q86UV5 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
USP48Q86UV5 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
USP48Q86UV5 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC29.55■■■□□ 2.32
USP48Q86UV5 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
USP48Q86UV5 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
USP48Q86UV5 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC29.55■■■□□ 2.32
USP48Q86UV5 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
USP48Q86UV5 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC29.55■■■□□ 2.32
USP48Q86UV5 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC29.55■■■□□ 2.32
USP48Q86UV5 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC29.55■■■□□ 2.32
USP48Q86UV5 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC29.54■■■□□ 2.32
USP48Q86UV5 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC29.54■■■□□ 2.32
USP48Q86UV5 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
USP48Q86UV5 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC29.53■■■□□ 2.32
USP48Q86UV5 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
USP48Q86UV5 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms