Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC27.87■■■□□ 2.05
SH3RF1Q7Z6J0 AC009299.2-201ENST00000482477 511 ntBASIC27.87■■■□□ 2.05
SH3RF1Q7Z6J0 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
SH3RF1Q7Z6J0 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC27.87■■■□□ 2.05
SH3RF1Q7Z6J0 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC27.86■■■□□ 2.05
SH3RF1Q7Z6J0 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC27.86■■■□□ 2.05
SH3RF1Q7Z6J0 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC27.86■■■□□ 2.05
SH3RF1Q7Z6J0 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC27.86■■■□□ 2.05
SH3RF1Q7Z6J0 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
SH3RF1Q7Z6J0 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC27.85■■■□□ 2.05
SH3RF1Q7Z6J0 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC27.85■■■□□ 2.05
SH3RF1Q7Z6J0 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
SH3RF1Q7Z6J0 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
SH3RF1Q7Z6J0 AC131212.1-201ENST00000613771 668 ntBASIC27.85■■■□□ 2.05
SH3RF1Q7Z6J0 AC091060.1-201ENST00000623524 1766 ntBASIC27.85■■■□□ 2.05
SH3RF1Q7Z6J0 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC27.85■■■□□ 2.05
SH3RF1Q7Z6J0 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
SH3RF1Q7Z6J0 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC27.84■■■□□ 2.05
SH3RF1Q7Z6J0 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
SH3RF1Q7Z6J0 SPCS2P3-201ENST00000500401 656 ntBASIC27.84■■■□□ 2.05
SH3RF1Q7Z6J0 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC27.84■■■□□ 2.05
SH3RF1Q7Z6J0 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC27.83■■■□□ 2.05
SH3RF1Q7Z6J0 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
SH3RF1Q7Z6J0 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC27.82■■■□□ 2.04
SH3RF1Q7Z6J0 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC27.82■■■□□ 2.04
SH3RF1Q7Z6J0 AP004609.3-201ENST00000610705 1884 ntBASIC27.81■■■□□ 2.04
SH3RF1Q7Z6J0 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC27.81■■■□□ 2.04
SH3RF1Q7Z6J0 RP9P-202ENST00000450133 1212 ntBASIC27.81■■■□□ 2.04
SH3RF1Q7Z6J0 WHAMMP3-201ENST00000611636 1609 ntBASIC27.81■■■□□ 2.04
SH3RF1Q7Z6J0 AC103834.1-201ENST00000520383 144 ntBASIC27.8■■■□□ 2.04
SH3RF1Q7Z6J0 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
SH3RF1Q7Z6J0 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
SH3RF1Q7Z6J0 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
SH3RF1Q7Z6J0 BEX3-202ENST00000372634 753 ntTSL 2 BASIC27.79■■■□□ 2.04
SH3RF1Q7Z6J0 THA1P-201ENST00000590384 1145 ntBASIC27.79■■■□□ 2.04
SH3RF1Q7Z6J0 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC27.79■■■□□ 2.04
SH3RF1Q7Z6J0 AL359258.2-201ENST00000564063 1566 ntBASIC27.78■■■□□ 2.04
SH3RF1Q7Z6J0 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC27.78■■■□□ 2.04
SH3RF1Q7Z6J0 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC27.78■■■□□ 2.04
SH3RF1Q7Z6J0 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
SH3RF1Q7Z6J0 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
SH3RF1Q7Z6J0 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC27.78■■■□□ 2.04
SH3RF1Q7Z6J0 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
SH3RF1Q7Z6J0 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC27.78■■■□□ 2.04
SH3RF1Q7Z6J0 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC27.78■■■□□ 2.04
SH3RF1Q7Z6J0 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC27.78■■■□□ 2.04
SH3RF1Q7Z6J0 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC27.78■■■□□ 2.04
SH3RF1Q7Z6J0 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC27.78■■■□□ 2.04
SH3RF1Q7Z6J0 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC27.77■■■□□ 2.04
SH3RF1Q7Z6J0 AC025884.2-201ENST00000553429 711 ntBASIC27.77■■■□□ 2.04
SH3RF1Q7Z6J0 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC27.77■■■□□ 2.04
SH3RF1Q7Z6J0 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC27.76■■■□□ 2.04
SH3RF1Q7Z6J0 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC27.76■■■□□ 2.03
SH3RF1Q7Z6J0 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC27.76■■■□□ 2.03
SH3RF1Q7Z6J0 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC27.76■■■□□ 2.03
SH3RF1Q7Z6J0 HES6-204ENST00000409182 863 ntTSL 2 BASIC27.76■■■□□ 2.03
SH3RF1Q7Z6J0 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC27.76■■■□□ 2.03
SH3RF1Q7Z6J0 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC27.76■■■□□ 2.03
SH3RF1Q7Z6J0 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
SH3RF1Q7Z6J0 PVT1_1.1-201ENST00000615125 194 ntBASIC27.75■■■□□ 2.03
SH3RF1Q7Z6J0 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC27.75■■■□□ 2.03
SH3RF1Q7Z6J0 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC27.75■■■□□ 2.03
SH3RF1Q7Z6J0 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
SH3RF1Q7Z6J0 AC142472.1-201ENST00000612013 1741 ntBASIC27.75■■■□□ 2.03
SH3RF1Q7Z6J0 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
SH3RF1Q7Z6J0 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
SH3RF1Q7Z6J0 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC27.74■■■□□ 2.03
SH3RF1Q7Z6J0 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC27.74■■■□□ 2.03
SH3RF1Q7Z6J0 AC093536.1-201ENST00000569153 554 ntBASIC27.74■■■□□ 2.03
SH3RF1Q7Z6J0 AC074183.2-201ENST00000623112 922 ntBASIC27.74■■■□□ 2.03
SH3RF1Q7Z6J0 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC27.74■■■□□ 2.03
SH3RF1Q7Z6J0 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC27.73■■■□□ 2.03
SH3RF1Q7Z6J0 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC27.73■■■□□ 2.03
SH3RF1Q7Z6J0 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
SH3RF1Q7Z6J0 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
SH3RF1Q7Z6J0 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
SH3RF1Q7Z6J0 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC27.73■■■□□ 2.03
SH3RF1Q7Z6J0 RAP2CP1-202ENST00000605179 643 ntBASIC27.73■■■□□ 2.03
SH3RF1Q7Z6J0 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
SH3RF1Q7Z6J0 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC27.73■■■□□ 2.03
SH3RF1Q7Z6J0 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC27.73■■■□□ 2.03
SH3RF1Q7Z6J0 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC27.73■■■□□ 2.03
SH3RF1Q7Z6J0 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
SH3RF1Q7Z6J0 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC27.72■■■□□ 2.03
SH3RF1Q7Z6J0 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC27.72■■■□□ 2.03
SH3RF1Q7Z6J0 GUSBP5-201ENST00000418136 578 ntBASIC27.72■■■□□ 2.03
SH3RF1Q7Z6J0 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
SH3RF1Q7Z6J0 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC27.71■■■□□ 2.03
SH3RF1Q7Z6J0 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
SH3RF1Q7Z6J0 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC27.71■■■□□ 2.03
SH3RF1Q7Z6J0 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
SH3RF1Q7Z6J0 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC27.71■■■□□ 2.03
SH3RF1Q7Z6J0 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC27.71■■■□□ 2.03
SH3RF1Q7Z6J0 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.03
SH3RF1Q7Z6J0 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.03
SH3RF1Q7Z6J0 YBX1P4-201ENST00000392794 808 ntBASIC27.7■■■□□ 2.02
SH3RF1Q7Z6J0 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC27.7■■■□□ 2.02
SH3RF1Q7Z6J0 OR2A1-AS1-204ENST00000470435 602 ntBASIC27.7■■■□□ 2.02
SH3RF1Q7Z6J0 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC27.7■■■□□ 2.02
SH3RF1Q7Z6J0 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms