Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC20.53■□□□□ 0.88
VPS13CQ709C8 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC20.52■□□□□ 0.88
VPS13CQ709C8 AP004833.2-201ENST00000532228 1454 ntBASIC20.52■□□□□ 0.88
VPS13CQ709C8 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS13CQ709C8 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
VPS13CQ709C8 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.87
VPS13CQ709C8 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VPS13CQ709C8 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC20.51■□□□□ 0.87
VPS13CQ709C8 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC20.51■□□□□ 0.87
VPS13CQ709C8 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC20.5■□□□□ 0.87
VPS13CQ709C8 WHAMMP3-201ENST00000611636 1609 ntBASIC20.5■□□□□ 0.87
VPS13CQ709C8 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC20.5■□□□□ 0.87
VPS13CQ709C8 KRT125P-201ENST00000546827 989 ntBASIC20.5■□□□□ 0.87
VPS13CQ709C8 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
VPS13CQ709C8 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
VPS13CQ709C8 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS13CQ709C8 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
VPS13CQ709C8 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC20.49■□□□□ 0.87
VPS13CQ709C8 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC20.49■□□□□ 0.87
VPS13CQ709C8 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC20.49■□□□□ 0.87
VPS13CQ709C8 RARRES2P6-201ENST00000567333 442 ntBASIC20.49■□□□□ 0.87
VPS13CQ709C8 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS13CQ709C8 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS13CQ709C8 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC20.49■□□□□ 0.87
VPS13CQ709C8 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS13CQ709C8 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC20.48■□□□□ 0.87
VPS13CQ709C8 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS13CQ709C8 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC20.48■□□□□ 0.87
VPS13CQ709C8 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS13CQ709C8 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS13CQ709C8 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS13CQ709C8 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS13CQ709C8 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
VPS13CQ709C8 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS13CQ709C8 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC20.46■□□□□ 0.87
VPS13CQ709C8 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS13CQ709C8 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
VPS13CQ709C8 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS13CQ709C8 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC20.45■□□□□ 0.86
VPS13CQ709C8 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VPS13CQ709C8 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
VPS13CQ709C8 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC20.44■□□□□ 0.86
VPS13CQ709C8 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
VPS13CQ709C8 MIR4466-201ENST00000606121 54 ntBASIC20.44■□□□□ 0.86
VPS13CQ709C8 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VPS13CQ709C8 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VPS13CQ709C8 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC20.43■□□□□ 0.86
VPS13CQ709C8 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC20.43■□□□□ 0.86
VPS13CQ709C8 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
VPS13CQ709C8 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS13CQ709C8 RPS2P7-201ENST00000447334 885 ntBASIC20.43■□□□□ 0.86
VPS13CQ709C8 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
VPS13CQ709C8 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC20.43■□□□□ 0.86
VPS13CQ709C8 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS13CQ709C8 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS13CQ709C8 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS13CQ709C8 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC20.42■□□□□ 0.86
VPS13CQ709C8 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC20.42■□□□□ 0.86
VPS13CQ709C8 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
VPS13CQ709C8 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS13CQ709C8 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS13CQ709C8 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC20.42■□□□□ 0.86
VPS13CQ709C8 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.42■□□□□ 0.86
VPS13CQ709C8 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
VPS13CQ709C8 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VPS13CQ709C8 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS13CQ709C8 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS13CQ709C8 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VPS13CQ709C8 LONRF2P2-201ENST00000439212 571 ntBASIC20.41■□□□□ 0.86
VPS13CQ709C8 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS13CQ709C8 AC005837.3-201ENST00000612163 286 ntBASIC20.4■□□□□ 0.86
VPS13CQ709C8 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS13CQ709C8 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
VPS13CQ709C8 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.4■□□□□ 0.86
VPS13CQ709C8 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC20.4■□□□□ 0.86
VPS13CQ709C8 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
VPS13CQ709C8 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC20.39■□□□□ 0.86
VPS13CQ709C8 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
VPS13CQ709C8 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS13CQ709C8 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
VPS13CQ709C8 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC20.38■□□□□ 0.85
VPS13CQ709C8 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS13CQ709C8 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VPS13CQ709C8 AL449106.1-201ENST00000608517 1980 ntBASIC20.38■□□□□ 0.85
VPS13CQ709C8 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS13CQ709C8 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
VPS13CQ709C8 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC20.38■□□□□ 0.85
VPS13CQ709C8 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC20.38■□□□□ 0.85
VPS13CQ709C8 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS13CQ709C8 AC110285.6-201ENST00000617652 491 ntBASIC20.38■□□□□ 0.85
VPS13CQ709C8 KRT16P3-201ENST00000439127 1283 ntBASIC20.37■□□□□ 0.85
VPS13CQ709C8 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
VPS13CQ709C8 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS13CQ709C8 AL136116.3-201ENST00000402907 1138 ntBASIC20.37■□□□□ 0.85
VPS13CQ709C8 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS13CQ709C8 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC20.37■□□□□ 0.85
VPS13CQ709C8 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
VPS13CQ709C8 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS13CQ709C8 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
VPS13CQ709C8 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC20.36■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms