Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC28.06■■■□□ 2.08
KRT40Q6A162 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC28.06■■■□□ 2.08
KRT40Q6A162 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
KRT40Q6A162 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
KRT40Q6A162 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
KRT40Q6A162 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC28.05■■■□□ 2.08
KRT40Q6A162 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
KRT40Q6A162 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC28.04■■■□□ 2.08
KRT40Q6A162 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC28.04■■■□□ 2.08
KRT40Q6A162 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC28.03■■■□□ 2.08
KRT40Q6A162 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC28.03■■■□□ 2.08
KRT40Q6A162 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
KRT40Q6A162 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC28.03■■■□□ 2.08
KRT40Q6A162 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC28.03■■■□□ 2.08
KRT40Q6A162 AC025884.2-201ENST00000553429 711 ntBASIC28.03■■■□□ 2.08
KRT40Q6A162 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC28.03■■■□□ 2.08
KRT40Q6A162 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC28.03■■■□□ 2.08
KRT40Q6A162 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC28.03■■■□□ 2.08
KRT40Q6A162 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC28.03■■■□□ 2.08
KRT40Q6A162 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC28.03■■■□□ 2.08
KRT40Q6A162 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
KRT40Q6A162 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
KRT40Q6A162 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
KRT40Q6A162 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC28.02■■■□□ 2.08
KRT40Q6A162 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
KRT40Q6A162 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
KRT40Q6A162 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
KRT40Q6A162 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC28.02■■■□□ 2.08
KRT40Q6A162 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
KRT40Q6A162 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
KRT40Q6A162 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC28.01■■■□□ 2.07
KRT40Q6A162 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
KRT40Q6A162 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
KRT40Q6A162 AC010501.1-201ENST00000606270 1962 ntBASIC28.01■■■□□ 2.07
KRT40Q6A162 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
KRT40Q6A162 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
KRT40Q6A162 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
KRT40Q6A162 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
KRT40Q6A162 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
KRT40Q6A162 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC28■■■□□ 2.07
KRT40Q6A162 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC28■■■□□ 2.07
KRT40Q6A162 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
KRT40Q6A162 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
KRT40Q6A162 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
KRT40Q6A162 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC27.99■■■□□ 2.07
KRT40Q6A162 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
KRT40Q6A162 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC27.99■■■□□ 2.07
KRT40Q6A162 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC27.99■■■□□ 2.07
KRT40Q6A162 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
KRT40Q6A162 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC27.99■■■□□ 2.07
KRT40Q6A162 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
KRT40Q6A162 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC27.99■■■□□ 2.07
KRT40Q6A162 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC27.98■■■□□ 2.07
KRT40Q6A162 PFN2-211ENST00000489155 636 ntTSL 4 BASIC27.97■■■□□ 2.07
KRT40Q6A162 SMPD5-203ENST00000639008 1464 ntBASIC27.96■■■□□ 2.07
KRT40Q6A162 ECEL1P2-201ENST00000461596 1295 ntBASIC27.96■■■□□ 2.07
KRT40Q6A162 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC27.95■■■□□ 2.07
KRT40Q6A162 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC27.95■■■□□ 2.07
KRT40Q6A162 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC27.95■■■□□ 2.07
KRT40Q6A162 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC27.95■■■□□ 2.06
KRT40Q6A162 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
KRT40Q6A162 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
KRT40Q6A162 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC27.95■■■□□ 2.06
KRT40Q6A162 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC27.94■■■□□ 2.06
KRT40Q6A162 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC27.94■■■□□ 2.06
KRT40Q6A162 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC27.94■■■□□ 2.06
KRT40Q6A162 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
KRT40Q6A162 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC27.94■■■□□ 2.06
KRT40Q6A162 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
KRT40Q6A162 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC27.93■■■□□ 2.06
KRT40Q6A162 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
KRT40Q6A162 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC27.93■■■□□ 2.06
KRT40Q6A162 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC27.93■■■□□ 2.06
KRT40Q6A162 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC27.93■■■□□ 2.06
KRT40Q6A162 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC27.93■■■□□ 2.06
KRT40Q6A162 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC27.93■■■□□ 2.06
KRT40Q6A162 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC27.93■■■□□ 2.06
KRT40Q6A162 U85056.1-201ENST00000616429 682 ntBASIC27.93■■■□□ 2.06
KRT40Q6A162 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC27.93■■■□□ 2.06
KRT40Q6A162 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
KRT40Q6A162 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC27.92■■■□□ 2.06
KRT40Q6A162 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC27.92■■■□□ 2.06
KRT40Q6A162 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
KRT40Q6A162 AC096887.2-201ENST00000623443 1957 ntBASIC27.91■■■□□ 2.06
KRT40Q6A162 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC27.91■■■□□ 2.06
KRT40Q6A162 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC27.91■■■□□ 2.06
KRT40Q6A162 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
KRT40Q6A162 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
KRT40Q6A162 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
KRT40Q6A162 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC27.9■■■□□ 2.06
KRT40Q6A162 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC27.89■■■□□ 2.06
KRT40Q6A162 MIR3960-201ENST00000583311 91 ntBASIC27.89■■■□□ 2.06
KRT40Q6A162 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC27.89■■■□□ 2.06
KRT40Q6A162 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC27.89■■■□□ 2.05
KRT40Q6A162 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC27.88■■■□□ 2.05
KRT40Q6A162 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
KRT40Q6A162 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC27.88■■■□□ 2.05
KRT40Q6A162 GFER-205ENST00000569451 517 ntTSL 5 BASIC27.88■■■□□ 2.05
KRT40Q6A162 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
KRT40Q6A162 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC27.88■■■□□ 2.05
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms