Protein–RNA interactions for Protein: P49642

PRIM1, DNA primase small subunit, humanhuman

Known RBP Predictions only

Length 420 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRIM1P49642 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
PRIM1P49642 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
PRIM1P49642 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
PRIM1P49642 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
PRIM1P49642 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
PRIM1P49642 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
PRIM1P49642 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC31.88■■■□□ 2.69
PRIM1P49642 ABCB10P1-201ENST00000614297 2181 ntBASIC31.88■■■□□ 2.69
PRIM1P49642 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
PRIM1P49642 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC31.87■■■□□ 2.69
PRIM1P49642 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC31.86■■■□□ 2.69
PRIM1P49642 PEMT-206ENST00000435340 960 ntTSL 5 BASIC31.86■■■□□ 2.69
PRIM1P49642 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC31.86■■■□□ 2.69
PRIM1P49642 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC31.85■■■□□ 2.69
PRIM1P49642 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC31.85■■■□□ 2.69
PRIM1P49642 MIR4787-201ENST00000607364 84 ntBASIC31.85■■■□□ 2.69
PRIM1P49642 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
PRIM1P49642 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
PRIM1P49642 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
PRIM1P49642 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
PRIM1P49642 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC31.83■■■□□ 2.69
PRIM1P49642 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
PRIM1P49642 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC31.82■■■□□ 2.68
PRIM1P49642 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC31.82■■■□□ 2.68
PRIM1P49642 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC31.82■■■□□ 2.68
PRIM1P49642 UNC93B8-201ENST00000511903 705 ntBASIC31.82■■■□□ 2.68
PRIM1P49642 KRT125P-201ENST00000546827 989 ntBASIC31.82■■■□□ 2.68
PRIM1P49642 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
PRIM1P49642 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
PRIM1P49642 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC31.81■■■□□ 2.68
PRIM1P49642 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC31.81■■■□□ 2.68
PRIM1P49642 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC31.81■■■□□ 2.68
PRIM1P49642 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
PRIM1P49642 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC31.79■■■□□ 2.68
PRIM1P49642 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC31.79■■■□□ 2.68
PRIM1P49642 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
PRIM1P49642 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
PRIM1P49642 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC31.78■■■□□ 2.68
PRIM1P49642 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC31.78■■■□□ 2.68
PRIM1P49642 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC31.78■■■□□ 2.68
PRIM1P49642 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC31.78■■■□□ 2.68
PRIM1P49642 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
PRIM1P49642 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC31.78■■■□□ 2.68
PRIM1P49642 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC31.77■■■□□ 2.68
PRIM1P49642 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC31.77■■■□□ 2.68
PRIM1P49642 BX664725.1-201ENST00000438252 379 ntBASIC31.77■■■□□ 2.68
PRIM1P49642 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC31.77■■■□□ 2.68
PRIM1P49642 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC31.77■■■□□ 2.68
PRIM1P49642 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
PRIM1P49642 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
PRIM1P49642 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC31.77■■■□□ 2.68
PRIM1P49642 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
PRIM1P49642 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC31.76■■■□□ 2.67
PRIM1P49642 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC31.76■■■□□ 2.67
PRIM1P49642 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC31.76■■■□□ 2.67
PRIM1P49642 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
PRIM1P49642 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC31.75■■■□□ 2.67
PRIM1P49642 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC31.75■■■□□ 2.67
PRIM1P49642 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC31.75■■■□□ 2.67
PRIM1P49642 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC31.75■■■□□ 2.67
PRIM1P49642 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC31.75■■■□□ 2.67
PRIM1P49642 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC31.74■■■□□ 2.67
PRIM1P49642 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC31.74■■■□□ 2.67
PRIM1P49642 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
PRIM1P49642 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC31.74■■■□□ 2.67
PRIM1P49642 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
PRIM1P49642 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC31.72■■■□□ 2.67
PRIM1P49642 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
PRIM1P49642 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
PRIM1P49642 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC31.71■■■□□ 2.67
PRIM1P49642 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
PRIM1P49642 KRT16P3-201ENST00000439127 1283 ntBASIC31.71■■■□□ 2.67
PRIM1P49642 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC31.71■■■□□ 2.67
PRIM1P49642 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
PRIM1P49642 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC31.71■■■□□ 2.67
PRIM1P49642 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC31.7■■■□□ 2.67
PRIM1P49642 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
PRIM1P49642 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC31.69■■■□□ 2.66
PRIM1P49642 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC31.69■■■□□ 2.66
PRIM1P49642 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC31.69■■■□□ 2.66
PRIM1P49642 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC31.69■■■□□ 2.66
PRIM1P49642 AC022616.5-201ENST00000518796 181 ntBASIC31.69■■■□□ 2.66
PRIM1P49642 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC31.69■■■□□ 2.66
PRIM1P49642 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
PRIM1P49642 MIR638-201ENST00000385237 100 ntBASIC31.68■■■□□ 2.66
PRIM1P49642 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
PRIM1P49642 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
PRIM1P49642 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
PRIM1P49642 KRT18P24-201ENST00000344739 1156 ntBASIC31.67■■■□□ 2.66
PRIM1P49642 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC31.67■■■□□ 2.66
PRIM1P49642 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC31.67■■■□□ 2.66
PRIM1P49642 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC31.67■■■□□ 2.66
PRIM1P49642 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
PRIM1P49642 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
PRIM1P49642 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC31.65■■■□□ 2.66
PRIM1P49642 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
PRIM1P49642 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC31.64■■■□□ 2.66
PRIM1P49642 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC31.64■■■□□ 2.66
PRIM1P49642 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC31.64■■■□□ 2.66
PRIM1P49642 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
Retrieved 100 of 98,524 protein–RNA pairs in 11.7 ms