Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CX3CR1P49238 PVT1-219ENST00000523427 938 ntTSL 3 BASIC21.18■□□□□ 0.98
CX3CR1P49238 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CX3CR1P49238 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CX3CR1P49238 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CX3CR1P49238 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CX3CR1P49238 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CX3CR1P49238 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CX3CR1P49238 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CX3CR1P49238 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CX3CR1P49238 PKM-204ENST00000449901 2526 ntTSL 2 BASIC21.17■□□□□ 0.98
CX3CR1P49238 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CX3CR1P49238 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CX3CR1P49238 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CX3CR1P49238 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CX3CR1P49238 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CX3CR1P49238 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
CX3CR1P49238 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CX3CR1P49238 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC21.16■□□□□ 0.98
CX3CR1P49238 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC21.16■□□□□ 0.98
CX3CR1P49238 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CX3CR1P49238 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CX3CR1P49238 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC21.15■□□□□ 0.98
CX3CR1P49238 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
CX3CR1P49238 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CX3CR1P49238 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CX3CR1P49238 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CX3CR1P49238 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CX3CR1P49238 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC21.14■□□□□ 0.97
CX3CR1P49238 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
CX3CR1P49238 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC21.13■□□□□ 0.97
CX3CR1P49238 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CX3CR1P49238 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC21.13■□□□□ 0.97
CX3CR1P49238 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC21.12■□□□□ 0.97
CX3CR1P49238 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CX3CR1P49238 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CX3CR1P49238 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CX3CR1P49238 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CX3CR1P49238 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CX3CR1P49238 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CX3CR1P49238 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CX3CR1P49238 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CX3CR1P49238 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CX3CR1P49238 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CX3CR1P49238 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CX3CR1P49238 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CX3CR1P49238 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CX3CR1P49238 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CX3CR1P49238 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
CX3CR1P49238 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
CX3CR1P49238 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CX3CR1P49238 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
CX3CR1P49238 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
CX3CR1P49238 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CX3CR1P49238 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
CX3CR1P49238 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CX3CR1P49238 MIR639-201ENST00000384974 98 ntBASIC21.1■□□□□ 0.97
CX3CR1P49238 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CX3CR1P49238 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
CX3CR1P49238 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
CX3CR1P49238 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CX3CR1P49238 RPS2-202ENST00000526522 924 ntTSL 2 BASIC21.09■□□□□ 0.97
CX3CR1P49238 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
CX3CR1P49238 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CX3CR1P49238 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
CX3CR1P49238 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CX3CR1P49238 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CX3CR1P49238 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
CX3CR1P49238 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CX3CR1P49238 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CX3CR1P49238 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CX3CR1P49238 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
CX3CR1P49238 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.96
CX3CR1P49238 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CX3CR1P49238 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CX3CR1P49238 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC21.07■□□□□ 0.96
CX3CR1P49238 AC096887.2-201ENST00000623443 1957 ntBASIC21.07■□□□□ 0.96
CX3CR1P49238 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC21.07■□□□□ 0.96
CX3CR1P49238 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CX3CR1P49238 TPT1-202ENST00000379055 948 ntTSL 2 BASIC21.07■□□□□ 0.96
CX3CR1P49238 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC21.07■□□□□ 0.96
CX3CR1P49238 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC21.07■□□□□ 0.96
CX3CR1P49238 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CX3CR1P49238 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC21.06■□□□□ 0.96
CX3CR1P49238 AL157400.5-201ENST00000507624 621 ntBASIC21.06■□□□□ 0.96
CX3CR1P49238 AC060814.1-201ENST00000554326 538 ntBASIC21.06■□□□□ 0.96
CX3CR1P49238 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CX3CR1P49238 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC21.06■□□□□ 0.96
CX3CR1P49238 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC21.06■□□□□ 0.96
CX3CR1P49238 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC21.05■□□□□ 0.96
CX3CR1P49238 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CX3CR1P49238 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC21.05■□□□□ 0.96
CX3CR1P49238 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CX3CR1P49238 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC21.04■□□□□ 0.96
CX3CR1P49238 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CX3CR1P49238 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CX3CR1P49238 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC21.04■□□□□ 0.96
CX3CR1P49238 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CX3CR1P49238 MOB2-207ENST00000614710 705 ntTSL 5 BASIC21.04■□□□□ 0.96
CX3CR1P49238 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 62.3 ms