Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
CIITAP33076 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC27.48■■□□□ 1.99
CIITAP33076 DUX4L9-201ENST00000449051 1259 ntBASIC27.47■■□□□ 1.99
CIITAP33076 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC27.47■■□□□ 1.99
CIITAP33076 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC27.47■■□□□ 1.99
CIITAP33076 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
CIITAP33076 ATP5G2P3-201ENST00000429083 425 ntBASIC27.46■■□□□ 1.99
CIITAP33076 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC27.45■■□□□ 1.98
CIITAP33076 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC27.45■■□□□ 1.98
CIITAP33076 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC27.45■■□□□ 1.98
CIITAP33076 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC27.45■■□□□ 1.98
CIITAP33076 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
CIITAP33076 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
CIITAP33076 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC27.44■■□□□ 1.98
CIITAP33076 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
CIITAP33076 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
CIITAP33076 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
CIITAP33076 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
CIITAP33076 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
CIITAP33076 TSPY13P-201ENST00000338964 914 ntBASIC27.43■■□□□ 1.98
CIITAP33076 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
CIITAP33076 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC27.43■■□□□ 1.98
CIITAP33076 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
CIITAP33076 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC27.43■■□□□ 1.98
CIITAP33076 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
CIITAP33076 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC27.42■■□□□ 1.98
CIITAP33076 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC27.42■■□□□ 1.98
CIITAP33076 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC27.42■■□□□ 1.98
CIITAP33076 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC27.42■■□□□ 1.98
CIITAP33076 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC27.42■■□□□ 1.98
CIITAP33076 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC27.42■■□□□ 1.98
CIITAP33076 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
CIITAP33076 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC27.41■■□□□ 1.98
CIITAP33076 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC27.41■■□□□ 1.98
CIITAP33076 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC27.41■■□□□ 1.98
CIITAP33076 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
CIITAP33076 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC27.4■■□□□ 1.98
CIITAP33076 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
CIITAP33076 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC27.39■■□□□ 1.98
CIITAP33076 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC27.39■■□□□ 1.98
CIITAP33076 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC27.39■■□□□ 1.98
CIITAP33076 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.97
CIITAP33076 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC27.38■■□□□ 1.97
CIITAP33076 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC27.38■■□□□ 1.97
CIITAP33076 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
CIITAP33076 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
CIITAP33076 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
CIITAP33076 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
CIITAP33076 AL033527.3-201ENST00000566366 1196 ntBASIC27.38■■□□□ 1.97
CIITAP33076 AC018755.3-202ENST00000596210 929 ntBASIC27.38■■□□□ 1.97
CIITAP33076 MIR6765-201ENST00000614092 87 ntBASIC27.38■■□□□ 1.97
CIITAP33076 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
CIITAP33076 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
CIITAP33076 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC27.38■■□□□ 1.97
CIITAP33076 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
CIITAP33076 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC27.37■■□□□ 1.97
CIITAP33076 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC27.37■■□□□ 1.97
CIITAP33076 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC27.37■■□□□ 1.97
CIITAP33076 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC27.37■■□□□ 1.97
CIITAP33076 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
CIITAP33076 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
CIITAP33076 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
CIITAP33076 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC27.36■■□□□ 1.97
CIITAP33076 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC27.36■■□□□ 1.97
CIITAP33076 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC27.36■■□□□ 1.97
CIITAP33076 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
CIITAP33076 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
CIITAP33076 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
CIITAP33076 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC27.36■■□□□ 1.97
CIITAP33076 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
CIITAP33076 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC27.36■■□□□ 1.97
CIITAP33076 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
CIITAP33076 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
CIITAP33076 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
CIITAP33076 IDNK-203ENST00000405990 629 ntTSL 2 BASIC27.35■■□□□ 1.97
CIITAP33076 DUX4L18-201ENST00000553347 1267 ntBASIC27.35■■□□□ 1.97
CIITAP33076 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC27.34■■□□□ 1.97
CIITAP33076 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
CIITAP33076 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
CIITAP33076 GUK1-208ENST00000366728 842 ntTSL 2 BASIC27.34■■□□□ 1.97
CIITAP33076 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
CIITAP33076 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC27.34■■□□□ 1.97
CIITAP33076 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
CIITAP33076 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC27.32■■□□□ 1.96
CIITAP33076 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
CIITAP33076 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
CIITAP33076 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
CIITAP33076 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
CIITAP33076 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
CIITAP33076 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC27.3■■□□□ 1.96
CIITAP33076 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC27.3■■□□□ 1.96
CIITAP33076 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC27.3■■□□□ 1.96
CIITAP33076 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC27.3■■□□□ 1.96
CIITAP33076 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
CIITAP33076 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
CIITAP33076 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC27.29■■□□□ 1.96
CIITAP33076 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC27.29■■□□□ 1.96
CIITAP33076 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC27.29■■□□□ 1.96
CIITAP33076 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
CIITAP33076 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC27.29■■□□□ 1.96
Retrieved 100 of 98,524 protein–RNA pairs in 168.3 ms