Protein–RNA interactions for Protein: P30408

TM4SF1, Transmembrane 4 L6 family member 1, humanhuman

Predictions only

Length 202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM4SF1P30408 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
TM4SF1P30408 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC30.74■■■□□ 2.51
TM4SF1P30408 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC30.74■■■□□ 2.51
TM4SF1P30408 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC30.74■■■□□ 2.51
TM4SF1P30408 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
TM4SF1P30408 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC30.74■■■□□ 2.51
TM4SF1P30408 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC30.73■■■□□ 2.51
TM4SF1P30408 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
TM4SF1P30408 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC30.73■■■□□ 2.51
TM4SF1P30408 KRT125P-201ENST00000546827 989 ntBASIC30.73■■■□□ 2.51
TM4SF1P30408 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC30.73■■■□□ 2.51
TM4SF1P30408 ABCB10P1-201ENST00000614297 2181 ntBASIC30.73■■■□□ 2.51
TM4SF1P30408 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
TM4SF1P30408 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC30.72■■■□□ 2.51
TM4SF1P30408 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
TM4SF1P30408 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC30.71■■■□□ 2.51
TM4SF1P30408 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
TM4SF1P30408 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
TM4SF1P30408 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC30.7■■■□□ 2.51
TM4SF1P30408 AC022616.5-201ENST00000518796 181 ntBASIC30.7■■■□□ 2.51
TM4SF1P30408 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC30.7■■■□□ 2.51
TM4SF1P30408 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC30.69■■■□□ 2.5
TM4SF1P30408 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC30.69■■■□□ 2.5
TM4SF1P30408 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
TM4SF1P30408 BX664725.1-201ENST00000438252 379 ntBASIC30.69■■■□□ 2.5
TM4SF1P30408 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC30.69■■■□□ 2.5
TM4SF1P30408 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC30.69■■■□□ 2.5
TM4SF1P30408 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC30.68■■■□□ 2.5
TM4SF1P30408 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC30.68■■■□□ 2.5
TM4SF1P30408 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC30.68■■■□□ 2.5
TM4SF1P30408 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC30.67■■■□□ 2.5
TM4SF1P30408 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
TM4SF1P30408 KRT18P24-201ENST00000344739 1156 ntBASIC30.67■■■□□ 2.5
TM4SF1P30408 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC30.67■■■□□ 2.5
TM4SF1P30408 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
TM4SF1P30408 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC30.67■■■□□ 2.5
TM4SF1P30408 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
TM4SF1P30408 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC30.66■■■□□ 2.5
TM4SF1P30408 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
TM4SF1P30408 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC30.66■■■□□ 2.5
TM4SF1P30408 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
TM4SF1P30408 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC30.65■■■□□ 2.5
TM4SF1P30408 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
TM4SF1P30408 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
TM4SF1P30408 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC30.65■■■□□ 2.5
TM4SF1P30408 MIR638-201ENST00000385237 100 ntBASIC30.64■■■□□ 2.5
TM4SF1P30408 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC30.64■■■□□ 2.5
TM4SF1P30408 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC30.64■■■□□ 2.5
TM4SF1P30408 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC30.64■■■□□ 2.5
TM4SF1P30408 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC30.63■■■□□ 2.49
TM4SF1P30408 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
TM4SF1P30408 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
TM4SF1P30408 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC30.63■■■□□ 2.49
TM4SF1P30408 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC30.63■■■□□ 2.49
TM4SF1P30408 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
TM4SF1P30408 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC30.62■■■□□ 2.49
TM4SF1P30408 KRT16P3-201ENST00000439127 1283 ntBASIC30.62■■■□□ 2.49
TM4SF1P30408 AC137630.3-201ENST00000607245 391 ntBASIC30.62■■■□□ 2.49
TM4SF1P30408 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC30.62■■■□□ 2.49
TM4SF1P30408 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
TM4SF1P30408 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC30.61■■■□□ 2.49
TM4SF1P30408 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
TM4SF1P30408 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
TM4SF1P30408 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC30.6■■■□□ 2.49
TM4SF1P30408 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC30.59■■■□□ 2.49
TM4SF1P30408 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
TM4SF1P30408 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC30.59■■■□□ 2.49
TM4SF1P30408 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
TM4SF1P30408 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC30.59■■■□□ 2.49
TM4SF1P30408 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC30.59■■■□□ 2.49
TM4SF1P30408 ST7-205ENST00000393446 2114 ntTSL 5 BASIC30.59■■■□□ 2.49
TM4SF1P30408 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC30.58■■■□□ 2.49
TM4SF1P30408 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
TM4SF1P30408 KRT18P10-201ENST00000388836 1287 ntBASIC30.58■■■□□ 2.49
TM4SF1P30408 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC30.58■■■□□ 2.49
TM4SF1P30408 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC30.57■■■□□ 2.49
TM4SF1P30408 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
TM4SF1P30408 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
TM4SF1P30408 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
TM4SF1P30408 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC30.57■■■□□ 2.48
TM4SF1P30408 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC30.57■■■□□ 2.48
TM4SF1P30408 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC30.57■■■□□ 2.48
TM4SF1P30408 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC30.57■■■□□ 2.48
TM4SF1P30408 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
TM4SF1P30408 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
TM4SF1P30408 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC30.57■■■□□ 2.48
TM4SF1P30408 AC021242.3-201ENST00000607598 1377 ntBASIC30.56■■■□□ 2.48
TM4SF1P30408 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
TM4SF1P30408 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
TM4SF1P30408 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC30.56■■■□□ 2.48
TM4SF1P30408 PROC-203ENST00000409048 1586 ntTSL 5 BASIC30.56■■■□□ 2.48
TM4SF1P30408 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC30.56■■■□□ 2.48
TM4SF1P30408 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC30.55■■■□□ 2.48
TM4SF1P30408 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC30.55■■■□□ 2.48
TM4SF1P30408 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
TM4SF1P30408 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
TM4SF1P30408 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC30.54■■■□□ 2.48
TM4SF1P30408 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
TM4SF1P30408 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
TM4SF1P30408 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC30.53■■■□□ 2.48
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms