Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC24.04■■□□□ 1.44
MSH3P20585 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC24.04■■□□□ 1.44
MSH3P20585 AC026202.3-201ENST00000600805 1127 ntBASIC24.04■■□□□ 1.44
MSH3P20585 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC24.03■■□□□ 1.44
MSH3P20585 AC133552.2-201ENST00000619106 1032 ntBASIC24.03■■□□□ 1.44
MSH3P20585 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
MSH3P20585 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC24.02■■□□□ 1.44
MSH3P20585 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
MSH3P20585 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
MSH3P20585 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC24.02■■□□□ 1.44
MSH3P20585 HES4-204ENST00000484667 667 ntTSL 3 BASIC24.02■■□□□ 1.44
MSH3P20585 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC24.02■■□□□ 1.44
MSH3P20585 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC24.02■■□□□ 1.44
MSH3P20585 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC24.02■■□□□ 1.44
MSH3P20585 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC24.02■■□□□ 1.44
MSH3P20585 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
MSH3P20585 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
MSH3P20585 AC009831.1-201ENST00000580420 1582 ntBASIC24.01■■□□□ 1.43
MSH3P20585 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
MSH3P20585 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
MSH3P20585 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC24■■□□□ 1.43
MSH3P20585 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC24■■□□□ 1.43
MSH3P20585 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC24■■□□□ 1.43
MSH3P20585 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
MSH3P20585 AC091060.1-201ENST00000623524 1766 ntBASIC23.99■■□□□ 1.43
MSH3P20585 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC23.99■■□□□ 1.43
MSH3P20585 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
MSH3P20585 RAP2CP1-202ENST00000605179 643 ntBASIC23.99■■□□□ 1.43
MSH3P20585 U85056.1-201ENST00000616429 682 ntBASIC23.99■■□□□ 1.43
MSH3P20585 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC23.99■■□□□ 1.43
MSH3P20585 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC23.99■■□□□ 1.43
MSH3P20585 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
MSH3P20585 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
MSH3P20585 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
MSH3P20585 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
MSH3P20585 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC23.98■■□□□ 1.43
MSH3P20585 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
MSH3P20585 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC23.97■■□□□ 1.43
MSH3P20585 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC23.97■■□□□ 1.43
MSH3P20585 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
MSH3P20585 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC23.97■■□□□ 1.43
MSH3P20585 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
MSH3P20585 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
MSH3P20585 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC23.96■■□□□ 1.43
MSH3P20585 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC23.96■■□□□ 1.43
MSH3P20585 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
MSH3P20585 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
MSH3P20585 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
MSH3P20585 NTF6A-201ENST00000591175 560 ntBASIC23.96■■□□□ 1.43
MSH3P20585 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC23.95■■□□□ 1.42
MSH3P20585 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC23.95■■□□□ 1.42
MSH3P20585 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
MSH3P20585 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
MSH3P20585 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
MSH3P20585 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
MSH3P20585 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
MSH3P20585 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
MSH3P20585 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC23.93■■□□□ 1.42
MSH3P20585 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
MSH3P20585 AL592293.1-201ENST00000502889 1188 ntBASIC23.93■■□□□ 1.42
MSH3P20585 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC23.93■■□□□ 1.42
MSH3P20585 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC23.93■■□□□ 1.42
MSH3P20585 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
MSH3P20585 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
MSH3P20585 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
MSH3P20585 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
MSH3P20585 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
MSH3P20585 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
MSH3P20585 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC23.92■■□□□ 1.42
MSH3P20585 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC23.92■■□□□ 1.42
MSH3P20585 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC23.92■■□□□ 1.42
MSH3P20585 AC145676.1-201ENST00000514988 2004 ntBASIC23.91■■□□□ 1.42
MSH3P20585 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC23.91■■□□□ 1.42
MSH3P20585 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
MSH3P20585 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC23.91■■□□□ 1.42
MSH3P20585 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC23.91■■□□□ 1.42
MSH3P20585 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC23.91■■□□□ 1.42
MSH3P20585 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
MSH3P20585 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
MSH3P20585 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC23.91■■□□□ 1.42
MSH3P20585 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
MSH3P20585 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
MSH3P20585 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
MSH3P20585 AC092803.2-201ENST00000564287 1899 ntBASIC23.9■■□□□ 1.42
MSH3P20585 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC23.89■■□□□ 1.42
MSH3P20585 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
MSH3P20585 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC23.89■■□□□ 1.41
MSH3P20585 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC23.89■■□□□ 1.41
MSH3P20585 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC23.89■■□□□ 1.41
MSH3P20585 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
MSH3P20585 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
MSH3P20585 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
MSH3P20585 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC23.88■■□□□ 1.41
MSH3P20585 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
MSH3P20585 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
MSH3P20585 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
MSH3P20585 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
MSH3P20585 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
MSH3P20585 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC23.88■■□□□ 1.41
MSH3P20585 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC23.88■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms