Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
CCDC28BQ9BUN5 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
CCDC28BQ9BUN5 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.29
CCDC28BQ9BUN5 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
CCDC28BQ9BUN5 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC16.83■□□□□ 0.28
CCDC28BQ9BUN5 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC28BQ9BUN5 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC28BQ9BUN5 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC28BQ9BUN5 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC28BQ9BUN5 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC16.83■□□□□ 0.28
CCDC28BQ9BUN5 BAALC-201ENST00000297574 801 ntTSL 3 BASIC16.83■□□□□ 0.28
CCDC28BQ9BUN5 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC16.83■□□□□ 0.28
CCDC28BQ9BUN5 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC28BQ9BUN5 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC28BQ9BUN5 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC28BQ9BUN5 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC16.83■□□□□ 0.28
CCDC28BQ9BUN5 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC28BQ9BUN5 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC28BQ9BUN5 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC28BQ9BUN5 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC28BQ9BUN5 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC16.83■□□□□ 0.28
CCDC28BQ9BUN5 HLA-F-220ENST00000434407 884 ntBASIC16.83■□□□□ 0.28
CCDC28BQ9BUN5 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC28BQ9BUN5 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC28BQ9BUN5 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC16.83■□□□□ 0.28
CCDC28BQ9BUN5 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC16.83■□□□□ 0.28
CCDC28BQ9BUN5 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC28BQ9BUN5 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
CCDC28BQ9BUN5 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC28BQ9BUN5 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
CCDC28BQ9BUN5 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.83■□□□□ 0.28
CCDC28BQ9BUN5 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC16.83■□□□□ 0.28
CCDC28BQ9BUN5 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.83■□□□□ 0.28
CCDC28BQ9BUN5 AC141257.4-201ENST00000634557 245 ntBASIC16.83■□□□□ 0.28
CCDC28BQ9BUN5 AC136944.6-201ENST00000634818 245 ntBASIC16.83■□□□□ 0.28
CCDC28BQ9BUN5 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC28BQ9BUN5 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC16.83■□□□□ 0.28
CCDC28BQ9BUN5 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC16.83■□□□□ 0.28
CCDC28BQ9BUN5 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC28BQ9BUN5 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC28BQ9BUN5 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC28BQ9BUN5 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
CCDC28BQ9BUN5 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
CCDC28BQ9BUN5 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC28BQ9BUN5 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
CCDC28BQ9BUN5 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC16.82■□□□□ 0.28
CCDC28BQ9BUN5 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC28BQ9BUN5 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC28BQ9BUN5 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC28BQ9BUN5 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
CCDC28BQ9BUN5 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC28BQ9BUN5 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC28BQ9BUN5 IGHGP-201ENST00000390555 1178 ntBASIC16.82■□□□□ 0.28
CCDC28BQ9BUN5 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
CCDC28BQ9BUN5 PON3-205ENST00000451904 1053 ntTSL 3 BASIC16.82■□□□□ 0.28
CCDC28BQ9BUN5 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC16.82■□□□□ 0.28
CCDC28BQ9BUN5 IGHV3-52-201ENST00000519770 353 ntBASIC16.82■□□□□ 0.28
CCDC28BQ9BUN5 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC28BQ9BUN5 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC28BQ9BUN5 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC28BQ9BUN5 FER1L4-210ENST00000615531 5998 ntBASIC16.82■□□□□ 0.28
CCDC28BQ9BUN5 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC28BQ9BUN5 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC28BQ9BUN5 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC28BQ9BUN5 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC28BQ9BUN5 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
CCDC28BQ9BUN5 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
CCDC28BQ9BUN5 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC28BQ9BUN5 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC28BQ9BUN5 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC28BQ9BUN5 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC16.82■□□□□ 0.28
CCDC28BQ9BUN5 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC28BQ9BUN5 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 CROCCP1-201ENST00000426910 5675 ntBASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 AC010460.3-201ENST00000511359 1579 ntBASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 AC104640.1-201ENST00000562617 2109 ntBASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28BQ9BUN5 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms