Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC32.64■■■□□ 2.82
SHROOM4Q9ULL8 TIMM8BP1-201ENST00000452384 211 ntBASIC32.64■■■□□ 2.82
SHROOM4Q9ULL8 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC32.64■■■□□ 2.82
SHROOM4Q9ULL8 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC32.64■■■□□ 2.82
SHROOM4Q9ULL8 LINC02560-201ENST00000596379 459 ntBASIC32.64■■■□□ 2.82
SHROOM4Q9ULL8 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC32.64■■■□□ 2.82
SHROOM4Q9ULL8 ACTL9-202ENST00000612068 1252 ntBASIC32.64■■■□□ 2.82
SHROOM4Q9ULL8 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
SHROOM4Q9ULL8 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC32.64■■■□□ 2.82
SHROOM4Q9ULL8 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC32.64■■■□□ 2.82
SHROOM4Q9ULL8 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC32.64■■■□□ 2.82
SHROOM4Q9ULL8 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC32.64■■■□□ 2.82
SHROOM4Q9ULL8 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC32.64■■■□□ 2.82
SHROOM4Q9ULL8 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC32.64■■■□□ 2.82
SHROOM4Q9ULL8 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC32.64■■■□□ 2.81
SHROOM4Q9ULL8 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
SHROOM4Q9ULL8 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC32.63■■■□□ 2.81
SHROOM4Q9ULL8 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC32.63■■■□□ 2.81
SHROOM4Q9ULL8 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
SHROOM4Q9ULL8 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC32.63■■■□□ 2.81
SHROOM4Q9ULL8 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC32.63■■■□□ 2.81
SHROOM4Q9ULL8 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC32.63■■■□□ 2.81
SHROOM4Q9ULL8 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC32.63■■■□□ 2.81
SHROOM4Q9ULL8 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC32.63■■■□□ 2.81
SHROOM4Q9ULL8 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC32.63■■■□□ 2.81
SHROOM4Q9ULL8 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC32.63■■■□□ 2.81
SHROOM4Q9ULL8 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC32.63■■■□□ 2.81
SHROOM4Q9ULL8 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
SHROOM4Q9ULL8 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC32.63■■■□□ 2.81
SHROOM4Q9ULL8 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC32.63■■■□□ 2.81
SHROOM4Q9ULL8 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC32.63■■■□□ 2.81
SHROOM4Q9ULL8 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
SHROOM4Q9ULL8 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
SHROOM4Q9ULL8 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
SHROOM4Q9ULL8 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
SHROOM4Q9ULL8 RPL30-202ENST00000396070 440 ntTSL 2 BASIC32.62■■■□□ 2.81
SHROOM4Q9ULL8 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
SHROOM4Q9ULL8 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
SHROOM4Q9ULL8 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC32.62■■■□□ 2.81
SHROOM4Q9ULL8 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC32.62■■■□□ 2.81
SHROOM4Q9ULL8 AC022494.1-201ENST00000466044 728 ntBASIC32.62■■■□□ 2.81
SHROOM4Q9ULL8 AC125807.1-201ENST00000483097 614 ntBASIC32.62■■■□□ 2.81
SHROOM4Q9ULL8 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC32.62■■■□□ 2.81
SHROOM4Q9ULL8 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC32.62■■■□□ 2.81
SHROOM4Q9ULL8 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC32.62■■■□□ 2.81
SHROOM4Q9ULL8 RPL28-209ENST00000560055 670 ntTSL 3 BASIC32.62■■■□□ 2.81
SHROOM4Q9ULL8 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC32.62■■■□□ 2.81
SHROOM4Q9ULL8 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC32.62■■■□□ 2.81
SHROOM4Q9ULL8 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC32.62■■■□□ 2.81
SHROOM4Q9ULL8 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC32.62■■■□□ 2.81
SHROOM4Q9ULL8 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
SHROOM4Q9ULL8 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC32.62■■■□□ 2.81
SHROOM4Q9ULL8 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
SHROOM4Q9ULL8 STX6-204ENST00000542060 4809 ntTSL 2 BASIC32.62■■■□□ 2.81
SHROOM4Q9ULL8 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC32.61■■■□□ 2.81
SHROOM4Q9ULL8 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC32.61■■■□□ 2.81
SHROOM4Q9ULL8 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC32.61■■■□□ 2.81
SHROOM4Q9ULL8 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC32.61■■■□□ 2.81
SHROOM4Q9ULL8 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC32.61■■■□□ 2.81
SHROOM4Q9ULL8 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC32.61■■■□□ 2.81
SHROOM4Q9ULL8 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC32.61■■■□□ 2.81
SHROOM4Q9ULL8 AC002056.1-201ENST00000395613 760 ntBASIC32.61■■■□□ 2.81
SHROOM4Q9ULL8 CENPM-205ENST00000404067 905 ntTSL 3 BASIC32.61■■■□□ 2.81
SHROOM4Q9ULL8 KRT8P48-201ENST00000515599 1220 ntBASIC32.61■■■□□ 2.81
SHROOM4Q9ULL8 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC32.61■■■□□ 2.81
SHROOM4Q9ULL8 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC32.61■■■□□ 2.81
SHROOM4Q9ULL8 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC32.61■■■□□ 2.81
SHROOM4Q9ULL8 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC32.61■■■□□ 2.81
SHROOM4Q9ULL8 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC32.61■■■□□ 2.81
SHROOM4Q9ULL8 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
SHROOM4Q9ULL8 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC32.61■■■□□ 2.81
SHROOM4Q9ULL8 LINC00304-203ENST00000565008 1864 ntBASIC32.61■■■□□ 2.81
SHROOM4Q9ULL8 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC32.61■■■□□ 2.81
SHROOM4Q9ULL8 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC32.61■■■□□ 2.81
SHROOM4Q9ULL8 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC32.61■■■□□ 2.81
SHROOM4Q9ULL8 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
SHROOM4Q9ULL8 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC32.61■■■□□ 2.81
SHROOM4Q9ULL8 HNRNPFP1-201ENST00000391730 1133 ntBASIC32.61■■■□□ 2.81
SHROOM4Q9ULL8 RAC2-204ENST00000406508 893 ntTSL 5 BASIC32.61■■■□□ 2.81
SHROOM4Q9ULL8 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC32.61■■■□□ 2.81
SHROOM4Q9ULL8 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC32.61■■■□□ 2.81
SHROOM4Q9ULL8 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC32.61■■■□□ 2.81
SHROOM4Q9ULL8 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC32.61■■■□□ 2.81
SHROOM4Q9ULL8 INO80E-210ENST00000567705 880 ntTSL 3 BASIC32.61■■■□□ 2.81
SHROOM4Q9ULL8 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC32.6■■■□□ 2.81
SHROOM4Q9ULL8 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC32.6■■■□□ 2.81
SHROOM4Q9ULL8 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC32.6■■■□□ 2.81
SHROOM4Q9ULL8 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC32.6■■■□□ 2.81
SHROOM4Q9ULL8 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC32.6■■■□□ 2.81
SHROOM4Q9ULL8 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC32.6■■■□□ 2.81
SHROOM4Q9ULL8 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC32.6■■■□□ 2.81
SHROOM4Q9ULL8 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
SHROOM4Q9ULL8 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC32.6■■■□□ 2.81
SHROOM4Q9ULL8 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
SHROOM4Q9ULL8 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC32.6■■■□□ 2.81
SHROOM4Q9ULL8 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC32.6■■■□□ 2.81
SHROOM4Q9ULL8 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC32.6■■■□□ 2.81
SHROOM4Q9ULL8 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC32.6■■■□□ 2.81
SHROOM4Q9ULL8 FAM86C2P-203ENST00000528684 1004 ntBASIC32.6■■■□□ 2.81
SHROOM4Q9ULL8 BAD-207ENST00000544785 525 ntTSL 3 BASIC32.6■■■□□ 2.81
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms