Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HDDC3Q8N4P3 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
HDDC3Q8N4P3 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HDDC3Q8N4P3 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
HDDC3Q8N4P3 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC17.37■□□□□ 0.37
HDDC3Q8N4P3 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
HDDC3Q8N4P3 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HDDC3Q8N4P3 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HDDC3Q8N4P3 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HDDC3Q8N4P3 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HDDC3Q8N4P3 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC17.37■□□□□ 0.37
HDDC3Q8N4P3 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HDDC3Q8N4P3 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC17.37■□□□□ 0.37
HDDC3Q8N4P3 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.37■□□□□ 0.37
HDDC3Q8N4P3 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HDDC3Q8N4P3 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HDDC3Q8N4P3 AC135050.7-201ENST00000624508 2218 ntBASIC17.36■□□□□ 0.37
HDDC3Q8N4P3 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HDDC3Q8N4P3 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
HDDC3Q8N4P3 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.36■□□□□ 0.37
HDDC3Q8N4P3 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
HDDC3Q8N4P3 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.36■□□□□ 0.37
HDDC3Q8N4P3 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HDDC3Q8N4P3 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HDDC3Q8N4P3 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HDDC3Q8N4P3 CD82-202ENST00000342935 967 ntTSL 5 BASIC17.36■□□□□ 0.37
HDDC3Q8N4P3 MIR770-201ENST00000390219 98 ntBASIC17.36■□□□□ 0.37
HDDC3Q8N4P3 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC17.36■□□□□ 0.37
HDDC3Q8N4P3 ATP6V0CP3-201ENST00000417255 467 ntBASIC17.36■□□□□ 0.37
HDDC3Q8N4P3 WDR53-203ENST00000429115 683 ntTSL 2 BASIC17.36■□□□□ 0.37
HDDC3Q8N4P3 MKNK2P1-201ENST00000437526 628 ntBASIC17.36■□□□□ 0.37
HDDC3Q8N4P3 CFL1-212ENST00000531413 636 ntTSL 3 BASIC17.36■□□□□ 0.37
HDDC3Q8N4P3 CD63-210ENST00000550776 870 ntTSL 5 BASIC17.36■□□□□ 0.37
HDDC3Q8N4P3 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC17.36■□□□□ 0.37
HDDC3Q8N4P3 CIPC-205ENST00000555437 566 ntTSL 3 BASIC17.36■□□□□ 0.37
HDDC3Q8N4P3 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC17.36■□□□□ 0.37
HDDC3Q8N4P3 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC17.36■□□□□ 0.37
HDDC3Q8N4P3 AC092865.6-201ENST00000642101 219 ntBASIC17.36■□□□□ 0.37
HDDC3Q8N4P3 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
HDDC3Q8N4P3 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HDDC3Q8N4P3 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HDDC3Q8N4P3 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
HDDC3Q8N4P3 AL590787.1-201ENST00000568856 1315 ntBASIC17.36■□□□□ 0.37
HDDC3Q8N4P3 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC17.36■□□□□ 0.37
HDDC3Q8N4P3 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
HDDC3Q8N4P3 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC17.36■□□□□ 0.37
HDDC3Q8N4P3 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
HDDC3Q8N4P3 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HDDC3Q8N4P3 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HDDC3Q8N4P3 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HDDC3Q8N4P3 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HDDC3Q8N4P3 AC012317.2-201ENST00000623305 2251 ntBASIC17.36■□□□□ 0.37
HDDC3Q8N4P3 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HDDC3Q8N4P3 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HDDC3Q8N4P3 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HDDC3Q8N4P3 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 CEND1P1-201ENST00000451006 455 ntBASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 CCND1-203ENST00000536559 553 ntTSL 3 BASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 TK1-204ENST00000590430 683 ntTSL 3 BASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 NEFHP1-201ENST00000412845 2629 ntBASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HDDC3Q8N4P3 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.34■□□□□ 0.37
HDDC3Q8N4P3 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
HDDC3Q8N4P3 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms