Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28AQ8IWP9 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC14.51□□□□□ -0.09
CCDC28AQ8IWP9 AL161772.1-201ENST00000610494 4412 ntBASIC14.51□□□□□ -0.09
CCDC28AQ8IWP9 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28AQ8IWP9 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
CCDC28AQ8IWP9 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28AQ8IWP9 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC14.51□□□□□ -0.09
CCDC28AQ8IWP9 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC14.51□□□□□ -0.09
CCDC28AQ8IWP9 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28AQ8IWP9 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28AQ8IWP9 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC14.51□□□□□ -0.09
CCDC28AQ8IWP9 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
CCDC28AQ8IWP9 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC14.51□□□□□ -0.09
CCDC28AQ8IWP9 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC14.51□□□□□ -0.09
CCDC28AQ8IWP9 GPX1P1-201ENST00000388829 606 ntBASIC14.51□□□□□ -0.09
CCDC28AQ8IWP9 AL390719.1-204ENST00000412397 1219 ntBASIC14.51□□□□□ -0.09
CCDC28AQ8IWP9 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC14.51□□□□□ -0.09
CCDC28AQ8IWP9 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC14.51□□□□□ -0.09
CCDC28AQ8IWP9 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28AQ8IWP9 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC14.51□□□□□ -0.09
CCDC28AQ8IWP9 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC14.51□□□□□ -0.09
CCDC28AQ8IWP9 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC14.51□□□□□ -0.09
CCDC28AQ8IWP9 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
CCDC28AQ8IWP9 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC14.51□□□□□ -0.09
CCDC28AQ8IWP9 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28AQ8IWP9 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28AQ8IWP9 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC14.51□□□□□ -0.09
CCDC28AQ8IWP9 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28AQ8IWP9 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28AQ8IWP9 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC14.51□□□□□ -0.09
CCDC28AQ8IWP9 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
CCDC28AQ8IWP9 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC14.51□□□□□ -0.09
CCDC28AQ8IWP9 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28AQ8IWP9 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28AQ8IWP9 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28AQ8IWP9 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28AQ8IWP9 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28AQ8IWP9 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 CROCCP5-201ENST00000436658 830 ntBASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC14.5□□□□□ -0.09
CCDC28AQ8IWP9 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC28AQ8IWP9 AC007686.3-201ENST00000619017 3487 ntBASIC14.49□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms