Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
ATL3Q6DD88 RCN1P1-201ENST00000400413 996 ntBASIC19.77■□□□□ 0.76
ATL3Q6DD88 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC19.77■□□□□ 0.76
ATL3Q6DD88 BX276092.5-203ENST00000456199 560 ntBASIC19.77■□□□□ 0.76
ATL3Q6DD88 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ATL3Q6DD88 AP002490.2-201ENST00000524791 560 ntBASIC19.77■□□□□ 0.76
ATL3Q6DD88 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC19.77■□□□□ 0.76
ATL3Q6DD88 ABR-204ENST00000543210 1049 ntTSL 2 BASIC19.77■□□□□ 0.76
ATL3Q6DD88 ABR-217ENST00000572441 563 ntTSL 4 BASIC19.77■□□□□ 0.76
ATL3Q6DD88 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
ATL3Q6DD88 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC19.77■□□□□ 0.76
ATL3Q6DD88 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ATL3Q6DD88 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
ATL3Q6DD88 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC19.77■□□□□ 0.76
ATL3Q6DD88 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ATL3Q6DD88 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC19.77■□□□□ 0.76
ATL3Q6DD88 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC19.77■□□□□ 0.76
ATL3Q6DD88 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ATL3Q6DD88 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
ATL3Q6DD88 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
ATL3Q6DD88 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
ATL3Q6DD88 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC19.77■□□□□ 0.75
ATL3Q6DD88 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
ATL3Q6DD88 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ATL3Q6DD88 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ATL3Q6DD88 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC19.76■□□□□ 0.75
ATL3Q6DD88 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC19.76■□□□□ 0.75
ATL3Q6DD88 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
ATL3Q6DD88 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC19.76■□□□□ 0.75
ATL3Q6DD88 MED25-212ENST00000618715 1467 ntTSL 5 BASIC19.76■□□□□ 0.75
ATL3Q6DD88 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
ATL3Q6DD88 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ATL3Q6DD88 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
ATL3Q6DD88 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ATL3Q6DD88 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ATL3Q6DD88 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ATL3Q6DD88 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC19.76■□□□□ 0.75
ATL3Q6DD88 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC19.76■□□□□ 0.75
ATL3Q6DD88 RN7SL850P-201ENST00000579959 291 ntBASIC19.76■□□□□ 0.75
ATL3Q6DD88 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC19.76■□□□□ 0.75
ATL3Q6DD88 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC19.76■□□□□ 0.75
ATL3Q6DD88 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ATL3Q6DD88 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ATL3Q6DD88 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
ATL3Q6DD88 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
ATL3Q6DD88 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ATL3Q6DD88 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ATL3Q6DD88 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
ATL3Q6DD88 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC19.76■□□□□ 0.75
ATL3Q6DD88 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ATL3Q6DD88 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
ATL3Q6DD88 RNF216P1-203ENST00000404404 2427 ntBASIC19.75■□□□□ 0.75
ATL3Q6DD88 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC19.75■□□□□ 0.75
ATL3Q6DD88 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
ATL3Q6DD88 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC19.75■□□□□ 0.75
ATL3Q6DD88 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC19.75■□□□□ 0.75
ATL3Q6DD88 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC19.75■□□□□ 0.75
ATL3Q6DD88 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
ATL3Q6DD88 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ATL3Q6DD88 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC19.75■□□□□ 0.75
ATL3Q6DD88 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC19.75■□□□□ 0.75
ATL3Q6DD88 NTF6B-201ENST00000591913 560 ntBASIC19.75■□□□□ 0.75
ATL3Q6DD88 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
ATL3Q6DD88 AC073592.5-201ENST00000624854 528 ntBASIC19.75■□□□□ 0.75
ATL3Q6DD88 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ATL3Q6DD88 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC19.75■□□□□ 0.75
ATL3Q6DD88 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ATL3Q6DD88 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ATL3Q6DD88 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ATL3Q6DD88 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
ATL3Q6DD88 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC19.75■□□□□ 0.75
ATL3Q6DD88 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
ATL3Q6DD88 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
ATL3Q6DD88 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC19.75■□□□□ 0.75
ATL3Q6DD88 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ATL3Q6DD88 PCDHB19P-201ENST00000570871 2371 ntBASIC19.75■□□□□ 0.75
ATL3Q6DD88 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ATL3Q6DD88 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
ATL3Q6DD88 TP73-AS1-210ENST00000637775 1455 ntBASIC19.74■□□□□ 0.75
ATL3Q6DD88 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
ATL3Q6DD88 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ATL3Q6DD88 AC016734.2-201ENST00000624325 1377 ntBASIC19.74■□□□□ 0.75
ATL3Q6DD88 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
ATL3Q6DD88 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC19.74■□□□□ 0.75
ATL3Q6DD88 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ATL3Q6DD88 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
ATL3Q6DD88 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC19.74■□□□□ 0.75
ATL3Q6DD88 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
ATL3Q6DD88 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC19.74■□□□□ 0.75
ATL3Q6DD88 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC19.74■□□□□ 0.75
ATL3Q6DD88 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC19.74■□□□□ 0.75
ATL3Q6DD88 AC091607.1-201ENST00000490318 1060 ntBASIC19.74■□□□□ 0.75
ATL3Q6DD88 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC19.74■□□□□ 0.75
ATL3Q6DD88 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC19.74■□□□□ 0.75
ATL3Q6DD88 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC19.74■□□□□ 0.75
ATL3Q6DD88 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ATL3Q6DD88 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC19.74■□□□□ 0.75
ATL3Q6DD88 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ATL3Q6DD88 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
ATL3Q6DD88 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 82 ms