Protein–RNA interactions for Protein: Q5VTR2

RNF20, E3 ubiquitin-protein ligase BRE1A, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF20Q5VTR2 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
RNF20Q5VTR2 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
RNF20Q5VTR2 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
RNF20Q5VTR2 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
RNF20Q5VTR2 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC20.7■□□□□ 0.91
RNF20Q5VTR2 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
RNF20Q5VTR2 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
RNF20Q5VTR2 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
RNF20Q5VTR2 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
RNF20Q5VTR2 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC20.7■□□□□ 0.9
RNF20Q5VTR2 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
RNF20Q5VTR2 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
RNF20Q5VTR2 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC20.7■□□□□ 0.9
RNF20Q5VTR2 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC20.7■□□□□ 0.9
RNF20Q5VTR2 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
RNF20Q5VTR2 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
RNF20Q5VTR2 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC20.7■□□□□ 0.9
RNF20Q5VTR2 ABCD1P5-201ENST00000445663 754 ntBASIC20.7■□□□□ 0.9
RNF20Q5VTR2 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
RNF20Q5VTR2 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC20.7■□□□□ 0.9
RNF20Q5VTR2 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC20.7■□□□□ 0.9
RNF20Q5VTR2 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
RNF20Q5VTR2 AC138894.3-201ENST00000603787 634 ntBASIC20.7■□□□□ 0.9
RNF20Q5VTR2 AL591684.3-201ENST00000605187 298 ntBASIC20.7■□□□□ 0.9
RNF20Q5VTR2 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC20.7■□□□□ 0.9
RNF20Q5VTR2 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
RNF20Q5VTR2 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
RNF20Q5VTR2 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RNF20Q5VTR2 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
RNF20Q5VTR2 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC20.7■□□□□ 0.9
RNF20Q5VTR2 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RNF20Q5VTR2 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RNF20Q5VTR2 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
RNF20Q5VTR2 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
RNF20Q5VTR2 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
RNF20Q5VTR2 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
RNF20Q5VTR2 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RNF20Q5VTR2 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
RNF20Q5VTR2 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RNF20Q5VTR2 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
RNF20Q5VTR2 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
RNF20Q5VTR2 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC20.69■□□□□ 0.9
RNF20Q5VTR2 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC20.69■□□□□ 0.9
RNF20Q5VTR2 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC20.69■□□□□ 0.9
RNF20Q5VTR2 AL020989.1-201ENST00000422979 469 ntBASIC20.69■□□□□ 0.9
RNF20Q5VTR2 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
RNF20Q5VTR2 SIGLEC30P-201ENST00000455569 941 ntBASIC20.69■□□□□ 0.9
RNF20Q5VTR2 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
RNF20Q5VTR2 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC20.69■□□□□ 0.9
RNF20Q5VTR2 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
RNF20Q5VTR2 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RNF20Q5VTR2 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC20.69■□□□□ 0.9
RNF20Q5VTR2 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC20.69■□□□□ 0.9
RNF20Q5VTR2 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
RNF20Q5VTR2 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RNF20Q5VTR2 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
RNF20Q5VTR2 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RNF20Q5VTR2 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
RNF20Q5VTR2 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
RNF20Q5VTR2 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
RNF20Q5VTR2 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
RNF20Q5VTR2 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
RNF20Q5VTR2 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
RNF20Q5VTR2 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
RNF20Q5VTR2 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF20Q5VTR2 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF20Q5VTR2 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RNF20Q5VTR2 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
RNF20Q5VTR2 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC20.68■□□□□ 0.9
RNF20Q5VTR2 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RNF20Q5VTR2 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF20Q5VTR2 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
RNF20Q5VTR2 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RNF20Q5VTR2 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC20.68■□□□□ 0.9
RNF20Q5VTR2 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF20Q5VTR2 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC20.68■□□□□ 0.9
RNF20Q5VTR2 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC20.68■□□□□ 0.9
RNF20Q5VTR2 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC20.68■□□□□ 0.9
RNF20Q5VTR2 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
RNF20Q5VTR2 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
RNF20Q5VTR2 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RNF20Q5VTR2 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC20.68■□□□□ 0.9
RNF20Q5VTR2 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RNF20Q5VTR2 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF20Q5VTR2 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RNF20Q5VTR2 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
RNF20Q5VTR2 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF20Q5VTR2 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF20Q5VTR2 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC20.68■□□□□ 0.9
RNF20Q5VTR2 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC20.68■□□□□ 0.9
RNF20Q5VTR2 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RNF20Q5VTR2 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RNF20Q5VTR2 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF20Q5VTR2 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
RNF20Q5VTR2 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF20Q5VTR2 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
RNF20Q5VTR2 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC20.67■□□□□ 0.9
RNF20Q5VTR2 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF20Q5VTR2 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
RNF20Q5VTR2 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms