Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGA1P17096 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGA1P17096 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
HMGA1P17096 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGA1P17096 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.85■□□□□ 0.45
HMGA1P17096 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC17.85■□□□□ 0.45
HMGA1P17096 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
HMGA1P17096 AC016396.2-201ENST00000562575 1417 ntBASIC17.85■□□□□ 0.45
HMGA1P17096 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGA1P17096 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC17.85■□□□□ 0.45
HMGA1P17096 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGA1P17096 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGA1P17096 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGA1P17096 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGA1P17096 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
HMGA1P17096 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGA1P17096 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGA1P17096 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGA1P17096 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.84■□□□□ 0.45
HMGA1P17096 HARS-203ENST00000431330 1774 ntTSL 2 BASIC17.84■□□□□ 0.45
HMGA1P17096 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC17.84■□□□□ 0.45
HMGA1P17096 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGA1P17096 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HMGA1P17096 EGFEM1P-202ENST00000431685 1563 ntBASIC17.84■□□□□ 0.45
HMGA1P17096 AL138688.1-201ENST00000624851 1594 ntBASIC17.84■□□□□ 0.45
HMGA1P17096 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGA1P17096 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
HMGA1P17096 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HMGA1P17096 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC17.84■□□□□ 0.45
HMGA1P17096 KRT18P28-201ENST00000453838 1332 ntBASIC17.84■□□□□ 0.45
HMGA1P17096 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC17.84■□□□□ 0.45
HMGA1P17096 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC17.84■□□□□ 0.45
HMGA1P17096 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HMGA1P17096 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HMGA1P17096 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGA1P17096 NEK7-201ENST00000367383 586 ntTSL 2 BASIC17.84■□□□□ 0.45
HMGA1P17096 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HMGA1P17096 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGA1P17096 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC17.84■□□□□ 0.45
HMGA1P17096 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC17.84■□□□□ 0.45
HMGA1P17096 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
HMGA1P17096 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC17.84■□□□□ 0.45
HMGA1P17096 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC17.84■□□□□ 0.45
HMGA1P17096 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HMGA1P17096 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC17.84■□□□□ 0.45
HMGA1P17096 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC17.84■□□□□ 0.45
HMGA1P17096 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
HMGA1P17096 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
HMGA1P17096 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC17.84■□□□□ 0.45
HMGA1P17096 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
HMGA1P17096 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC17.84■□□□□ 0.45
HMGA1P17096 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGA1P17096 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC17.84■□□□□ 0.45
HMGA1P17096 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HMGA1P17096 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGA1P17096 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC17.84■□□□□ 0.45
HMGA1P17096 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGA1P17096 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HMGA1P17096 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC17.84■□□□□ 0.45
HMGA1P17096 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC17.84■□□□□ 0.45
HMGA1P17096 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC17.84■□□□□ 0.45
HMGA1P17096 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
HMGA1P17096 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC17.83■□□□□ 0.45
HMGA1P17096 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC17.83■□□□□ 0.45
HMGA1P17096 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
HMGA1P17096 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
HMGA1P17096 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
HMGA1P17096 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
HMGA1P17096 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.83■□□□□ 0.45
HMGA1P17096 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
HMGA1P17096 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
HMGA1P17096 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC17.83■□□□□ 0.45
HMGA1P17096 AC007613.1-201ENST00000572811 2597 ntBASIC17.83■□□□□ 0.44
HMGA1P17096 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
HMGA1P17096 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC17.83■□□□□ 0.44
HMGA1P17096 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
HMGA1P17096 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.44
HMGA1P17096 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
HMGA1P17096 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
HMGA1P17096 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
HMGA1P17096 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
HMGA1P17096 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
HMGA1P17096 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
HMGA1P17096 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
HMGA1P17096 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
HMGA1P17096 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HMGA1P17096 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
HMGA1P17096 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
HMGA1P17096 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC17.82■□□□□ 0.44
HMGA1P17096 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGA1P17096 GNAS-203ENST00000306120 1878 ntBASIC17.82■□□□□ 0.44
HMGA1P17096 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC17.82■□□□□ 0.44
HMGA1P17096 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGA1P17096 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGA1P17096 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
HMGA1P17096 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGA1P17096 AC093525.9-201ENST00000624961 1746 ntBASIC17.82■□□□□ 0.44
HMGA1P17096 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HMGA1P17096 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGA1P17096 STOM-202ENST00000347359 870 ntTSL 2 BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms