Protein–RNA interactions for Protein: O43353

RIPK2, Receptor-interacting serine/threonine-protein kinase 2, humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK2O43353 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
RIPK2O43353 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RIPK2O43353 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RIPK2O43353 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
RIPK2O43353 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RIPK2O43353 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RIPK2O43353 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
RIPK2O43353 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
RIPK2O43353 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RIPK2O43353 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RIPK2O43353 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RIPK2O43353 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RIPK2O43353 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RIPK2O43353 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
RIPK2O43353 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RIPK2O43353 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RIPK2O43353 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RIPK2O43353 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
RIPK2O43353 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
RIPK2O43353 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RIPK2O43353 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
RIPK2O43353 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
RIPK2O43353 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC17.62■□□□□ 0.41
RIPK2O43353 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RIPK2O43353 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC17.62■□□□□ 0.41
RIPK2O43353 MIR718-201ENST00000390190 70 ntBASIC17.62■□□□□ 0.41
RIPK2O43353 HLA-F-220ENST00000434407 884 ntBASIC17.62■□□□□ 0.41
RIPK2O43353 AC008550.1-201ENST00000511500 884 ntBASIC17.62■□□□□ 0.41
RIPK2O43353 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC17.62■□□□□ 0.41
RIPK2O43353 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RIPK2O43353 ANKRD20A8P-203ENST00000641373 517 ntBASIC17.62■□□□□ 0.41
RIPK2O43353 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RIPK2O43353 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.62■□□□□ 0.41
RIPK2O43353 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RIPK2O43353 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
RIPK2O43353 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
RIPK2O43353 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
RIPK2O43353 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC17.62■□□□□ 0.41
RIPK2O43353 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RIPK2O43353 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.62■□□□□ 0.41
RIPK2O43353 TBC1D3P5-201ENST00000579401 1545 ntBASIC17.62■□□□□ 0.41
RIPK2O43353 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC17.62■□□□□ 0.41
RIPK2O43353 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RIPK2O43353 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
RIPK2O43353 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RIPK2O43353 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
RIPK2O43353 AC022188.1-201ENST00000620960 1664 ntBASIC17.61■□□□□ 0.41
RIPK2O43353 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
RIPK2O43353 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RIPK2O43353 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RIPK2O43353 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC17.61■□□□□ 0.41
RIPK2O43353 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RIPK2O43353 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RIPK2O43353 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
RIPK2O43353 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RIPK2O43353 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RIPK2O43353 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC17.61■□□□□ 0.41
RIPK2O43353 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
RIPK2O43353 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RIPK2O43353 IGHGP-201ENST00000390555 1178 ntBASIC17.61■□□□□ 0.41
RIPK2O43353 CRAT-202ENST00000393384 973 ntTSL 2 BASIC17.61■□□□□ 0.41
RIPK2O43353 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC17.61■□□□□ 0.41
RIPK2O43353 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC17.61■□□□□ 0.41
RIPK2O43353 PON3-205ENST00000451904 1053 ntTSL 3 BASIC17.61■□□□□ 0.41
RIPK2O43353 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC17.61■□□□□ 0.41
RIPK2O43353 DENND3-207ENST00000518347 850 ntTSL 2 BASIC17.61■□□□□ 0.41
RIPK2O43353 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC17.61■□□□□ 0.41
RIPK2O43353 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
RIPK2O43353 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC17.61■□□□□ 0.41
RIPK2O43353 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC17.61■□□□□ 0.41
RIPK2O43353 AC141257.4-201ENST00000634557 245 ntBASIC17.61■□□□□ 0.41
RIPK2O43353 AC136944.6-201ENST00000634818 245 ntBASIC17.61■□□□□ 0.41
RIPK2O43353 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC17.61■□□□□ 0.41
RIPK2O43353 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
RIPK2O43353 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC17.61■□□□□ 0.41
RIPK2O43353 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RIPK2O43353 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC17.61■□□□□ 0.41
RIPK2O43353 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RIPK2O43353 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RIPK2O43353 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
RIPK2O43353 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RIPK2O43353 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RIPK2O43353 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RIPK2O43353 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
RIPK2O43353 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC17.61■□□□□ 0.41
RIPK2O43353 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
RIPK2O43353 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RIPK2O43353 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
RIPK2O43353 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
RIPK2O43353 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
RIPK2O43353 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RIPK2O43353 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC17.6■□□□□ 0.41
RIPK2O43353 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RIPK2O43353 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC17.6■□□□□ 0.41
RIPK2O43353 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RIPK2O43353 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
RIPK2O43353 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RIPK2O43353 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
RIPK2O43353 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC17.6■□□□□ 0.41
RIPK2O43353 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms