Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
RTF1Q92541 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC22.68■■□□□ 1.22
RTF1Q92541 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
RTF1Q92541 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC22.68■■□□□ 1.22
RTF1Q92541 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
RTF1Q92541 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
RTF1Q92541 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC22.67■■□□□ 1.22
RTF1Q92541 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC22.67■■□□□ 1.22
RTF1Q92541 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
RTF1Q92541 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC22.67■■□□□ 1.22
RTF1Q92541 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC22.67■■□□□ 1.22
RTF1Q92541 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC22.67■■□□□ 1.22
RTF1Q92541 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
RTF1Q92541 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
RTF1Q92541 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
RTF1Q92541 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
RTF1Q92541 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
RTF1Q92541 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
RTF1Q92541 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC22.67■■□□□ 1.22
RTF1Q92541 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
RTF1Q92541 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC22.67■■□□□ 1.22
RTF1Q92541 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC22.67■■□□□ 1.22
RTF1Q92541 AC040169.1-201ENST00000565382 521 ntBASIC22.67■■□□□ 1.22
RTF1Q92541 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC22.67■■□□□ 1.22
RTF1Q92541 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC22.67■■□□□ 1.22
RTF1Q92541 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC22.67■■□□□ 1.22
RTF1Q92541 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
RTF1Q92541 LYSMD4-203ENST00000378904 2122 ntBASIC22.67■■□□□ 1.22
RTF1Q92541 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
RTF1Q92541 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
RTF1Q92541 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
RTF1Q92541 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC22.67■■□□□ 1.22
RTF1Q92541 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
RTF1Q92541 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
RTF1Q92541 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
RTF1Q92541 NOC2LP1-202ENST00000452600 2235 ntBASIC22.66■■□□□ 1.22
RTF1Q92541 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
RTF1Q92541 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
RTF1Q92541 AC133963.1-201ENST00000504166 1679 ntBASIC22.66■■□□□ 1.22
RTF1Q92541 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
RTF1Q92541 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC22.66■■□□□ 1.22
RTF1Q92541 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC22.66■■□□□ 1.22
RTF1Q92541 IMP4-203ENST00000409935 958 ntTSL 5 BASIC22.66■■□□□ 1.22
RTF1Q92541 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
RTF1Q92541 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC22.66■■□□□ 1.22
RTF1Q92541 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC22.66■■□□□ 1.22
RTF1Q92541 GGTLC5P-201ENST00000617623 998 ntBASIC22.66■■□□□ 1.22
RTF1Q92541 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
RTF1Q92541 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC22.66■■□□□ 1.22
RTF1Q92541 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
RTF1Q92541 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC22.66■■□□□ 1.22
RTF1Q92541 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
RTF1Q92541 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
RTF1Q92541 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
RTF1Q92541 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
RTF1Q92541 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
RTF1Q92541 AC008764.6-201ENST00000595909 2069 ntBASIC22.66■■□□□ 1.22
RTF1Q92541 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
RTF1Q92541 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
RTF1Q92541 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
RTF1Q92541 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC22.65■■□□□ 1.22
RTF1Q92541 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC22.65■■□□□ 1.22
RTF1Q92541 AL590787.1-201ENST00000568856 1315 ntBASIC22.65■■□□□ 1.22
RTF1Q92541 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
RTF1Q92541 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
RTF1Q92541 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC22.65■■□□□ 1.22
RTF1Q92541 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC22.65■■□□□ 1.22
RTF1Q92541 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC22.65■■□□□ 1.22
RTF1Q92541 PRSS29P-201ENST00000440800 595 ntBASIC22.65■■□□□ 1.22
RTF1Q92541 VN2R19P-201ENST00000442399 1052 ntBASIC22.65■■□□□ 1.22
RTF1Q92541 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
RTF1Q92541 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC22.65■■□□□ 1.22
RTF1Q92541 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
RTF1Q92541 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC22.65■■□□□ 1.22
RTF1Q92541 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC22.65■■□□□ 1.22
RTF1Q92541 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
RTF1Q92541 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
RTF1Q92541 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC22.65■■□□□ 1.22
RTF1Q92541 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC22.65■■□□□ 1.22
RTF1Q92541 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC22.65■■□□□ 1.22
RTF1Q92541 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC22.65■■□□□ 1.22
RTF1Q92541 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
RTF1Q92541 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC22.64■■□□□ 1.22
RTF1Q92541 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
RTF1Q92541 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC22.64■■□□□ 1.22
RTF1Q92541 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.22
RTF1Q92541 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC22.64■■□□□ 1.22
RTF1Q92541 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.22
RTF1Q92541 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
RTF1Q92541 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC22.64■■□□□ 1.22
RTF1Q92541 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
RTF1Q92541 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
RTF1Q92541 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
RTF1Q92541 MRPL20P1-201ENST00000400819 433 ntBASIC22.64■■□□□ 1.21
RTF1Q92541 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC22.64■■□□□ 1.21
RTF1Q92541 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC22.64■■□□□ 1.21
RTF1Q92541 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC22.64■■□□□ 1.21
RTF1Q92541 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC22.64■■□□□ 1.21
RTF1Q92541 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC22.64■■□□□ 1.21
RTF1Q92541 PI4KAP1-204ENST00000612579 1703 ntBASIC22.64■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms