Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
FOXA1P55317 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC16.86■□□□□ 0.29
FOXA1P55317 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.86■□□□□ 0.29
FOXA1P55317 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC16.86■□□□□ 0.29
FOXA1P55317 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
FOXA1P55317 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
FOXA1P55317 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
FOXA1P55317 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
FOXA1P55317 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC16.86■□□□□ 0.29
FOXA1P55317 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
FOXA1P55317 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
FOXA1P55317 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
FOXA1P55317 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
FOXA1P55317 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
FOXA1P55317 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC16.86■□□□□ 0.29
FOXA1P55317 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.86■□□□□ 0.29
FOXA1P55317 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
FOXA1P55317 IGHV3-52-201ENST00000519770 353 ntBASIC16.86■□□□□ 0.29
FOXA1P55317 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC16.86■□□□□ 0.29
FOXA1P55317 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
FOXA1P55317 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
FOXA1P55317 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
FOXA1P55317 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.86■□□□□ 0.29
FOXA1P55317 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
FOXA1P55317 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
FOXA1P55317 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
FOXA1P55317 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
FOXA1P55317 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC16.86■□□□□ 0.29
FOXA1P55317 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.86■□□□□ 0.29
FOXA1P55317 KRT8P10-201ENST00000450021 1447 ntBASIC16.86■□□□□ 0.29
FOXA1P55317 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
FOXA1P55317 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
FOXA1P55317 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
FOXA1P55317 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
FOXA1P55317 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
FOXA1P55317 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
FOXA1P55317 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
FOXA1P55317 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.85■□□□□ 0.29
FOXA1P55317 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
FOXA1P55317 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC16.85■□□□□ 0.29
FOXA1P55317 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
FOXA1P55317 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
FOXA1P55317 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
FOXA1P55317 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
FOXA1P55317 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
FOXA1P55317 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
FOXA1P55317 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
FOXA1P55317 GUK1-204ENST00000366721 689 ntTSL 3 BASIC16.85■□□□□ 0.29
FOXA1P55317 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
FOXA1P55317 MYCLP1-201ENST00000372451 1075 ntBASIC16.85■□□□□ 0.29
FOXA1P55317 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC16.85■□□□□ 0.29
FOXA1P55317 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC16.85■□□□□ 0.29
FOXA1P55317 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC16.85■□□□□ 0.29
FOXA1P55317 AC091607.1-201ENST00000490318 1060 ntBASIC16.85■□□□□ 0.29
FOXA1P55317 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC16.85■□□□□ 0.29
FOXA1P55317 AC011498.5-201ENST00000592027 486 ntBASIC16.85■□□□□ 0.29
FOXA1P55317 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC16.85■□□□□ 0.29
FOXA1P55317 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
FOXA1P55317 AC092171.3-201ENST00000610122 2651 ntBASIC16.85■□□□□ 0.29
FOXA1P55317 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
FOXA1P55317 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
FOXA1P55317 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
FOXA1P55317 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC16.85■□□□□ 0.29
FOXA1P55317 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.85■□□□□ 0.29
FOXA1P55317 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
FOXA1P55317 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.85■□□□□ 0.29
FOXA1P55317 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.85■□□□□ 0.29
FOXA1P55317 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
FOXA1P55317 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC16.85■□□□□ 0.29
FOXA1P55317 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
FOXA1P55317 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC16.85■□□□□ 0.29
FOXA1P55317 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC16.85■□□□□ 0.29
FOXA1P55317 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC16.85■□□□□ 0.29
FOXA1P55317 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
FOXA1P55317 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
FOXA1P55317 AC018695.7-201ENST00000624587 2492 ntBASIC16.85■□□□□ 0.29
FOXA1P55317 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.85■□□□□ 0.29
FOXA1P55317 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
FOXA1P55317 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
FOXA1P55317 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
FOXA1P55317 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
FOXA1P55317 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
FOXA1P55317 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
FOXA1P55317 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
FOXA1P55317 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
FOXA1P55317 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
FOXA1P55317 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
FOXA1P55317 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC16.84■□□□□ 0.29
FOXA1P55317 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
FOXA1P55317 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC16.84■□□□□ 0.29
FOXA1P55317 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC16.84■□□□□ 0.29
FOXA1P55317 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC16.84■□□□□ 0.29
FOXA1P55317 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
FOXA1P55317 AC122714.2-201ENST00000502787 707 ntBASIC16.84■□□□□ 0.29
FOXA1P55317 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC16.84■□□□□ 0.29
FOXA1P55317 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC16.84■□□□□ 0.29
FOXA1P55317 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC16.84■□□□□ 0.29
FOXA1P55317 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC16.84■□□□□ 0.29
FOXA1P55317 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
FOXA1P55317 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms