Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
VTA1Q9NP79 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VTA1Q9NP79 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
VTA1Q9NP79 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC19.39■□□□□ 0.69
VTA1Q9NP79 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC19.39■□□□□ 0.69
VTA1Q9NP79 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
VTA1Q9NP79 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC19.39■□□□□ 0.69
VTA1Q9NP79 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VTA1Q9NP79 FALEC-201ENST00000416894 566 ntTSL 3 BASIC19.39■□□□□ 0.69
VTA1Q9NP79 TSEN15P1-201ENST00000423257 515 ntBASIC19.39■□□□□ 0.69
VTA1Q9NP79 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
VTA1Q9NP79 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
VTA1Q9NP79 AC112191.1-201ENST00000523689 701 ntBASIC19.39■□□□□ 0.69
VTA1Q9NP79 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC19.39■□□□□ 0.69
VTA1Q9NP79 AC105339.1-204ENST00000636249 355 ntBASIC19.39■□□□□ 0.69
VTA1Q9NP79 PODN-203ENST00000395871 2744 ntTSL 5 BASIC19.39■□□□□ 0.69
VTA1Q9NP79 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC19.39■□□□□ 0.69
VTA1Q9NP79 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VTA1Q9NP79 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VTA1Q9NP79 AC006116.8-202ENST00000587620 1550 ntBASIC19.39■□□□□ 0.69
VTA1Q9NP79 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC19.39■□□□□ 0.69
VTA1Q9NP79 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VTA1Q9NP79 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VTA1Q9NP79 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC19.39■□□□□ 0.69
VTA1Q9NP79 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VTA1Q9NP79 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
VTA1Q9NP79 AC104581.1-202ENST00000635932 2618 ntBASIC19.38■□□□□ 0.69
VTA1Q9NP79 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VTA1Q9NP79 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VTA1Q9NP79 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VTA1Q9NP79 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
VTA1Q9NP79 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VTA1Q9NP79 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
VTA1Q9NP79 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
VTA1Q9NP79 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
VTA1Q9NP79 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VTA1Q9NP79 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC19.38■□□□□ 0.69
VTA1Q9NP79 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VTA1Q9NP79 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC19.38■□□□□ 0.69
VTA1Q9NP79 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC19.38■□□□□ 0.69
VTA1Q9NP79 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VTA1Q9NP79 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC19.38■□□□□ 0.69
VTA1Q9NP79 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC19.38■□□□□ 0.69
VTA1Q9NP79 RNF34-208ENST00000555076 593 ntTSL 3 BASIC19.38■□□□□ 0.69
VTA1Q9NP79 RPL28-209ENST00000560055 670 ntTSL 3 BASIC19.38■□□□□ 0.69
VTA1Q9NP79 LINC00304-203ENST00000565008 1864 ntBASIC19.38■□□□□ 0.69
VTA1Q9NP79 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC19.38■□□□□ 0.69
VTA1Q9NP79 AL121761.2-201ENST00000598007 1648 ntBASIC19.38■□□□□ 0.69
VTA1Q9NP79 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC19.38■□□□□ 0.69
VTA1Q9NP79 ORC5-208ENST00000626700 344 ntTSL 3 BASIC19.38■□□□□ 0.69
VTA1Q9NP79 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC19.37■□□□□ 0.69
VTA1Q9NP79 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC19.37■□□□□ 0.69
VTA1Q9NP79 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VTA1Q9NP79 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VTA1Q9NP79 AC092919.2-201ENST00000623631 1645 ntBASIC19.37■□□□□ 0.69
VTA1Q9NP79 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC19.37■□□□□ 0.69
VTA1Q9NP79 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC19.37■□□□□ 0.69
VTA1Q9NP79 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
VTA1Q9NP79 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
VTA1Q9NP79 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC19.37■□□□□ 0.69
VTA1Q9NP79 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
VTA1Q9NP79 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC19.37■□□□□ 0.69
VTA1Q9NP79 AC004461.1-201ENST00000412461 403 ntBASIC19.37■□□□□ 0.69
VTA1Q9NP79 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
VTA1Q9NP79 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC19.37■□□□□ 0.69
VTA1Q9NP79 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC19.37■□□□□ 0.69
VTA1Q9NP79 NMU-203ENST00000507338 658 ntTSL 3 BASIC19.37■□□□□ 0.69
VTA1Q9NP79 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VTA1Q9NP79 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC19.37■□□□□ 0.69
VTA1Q9NP79 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC19.37■□□□□ 0.69
VTA1Q9NP79 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC19.37■□□□□ 0.69
VTA1Q9NP79 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VTA1Q9NP79 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC19.37■□□□□ 0.69
VTA1Q9NP79 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC19.37■□□□□ 0.69
VTA1Q9NP79 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VTA1Q9NP79 BICD1-207ENST00000551848 1962 ntBASIC19.37■□□□□ 0.69
VTA1Q9NP79 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VTA1Q9NP79 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
VTA1Q9NP79 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC19.36■□□□□ 0.69
VTA1Q9NP79 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC19.36■□□□□ 0.69
VTA1Q9NP79 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VTA1Q9NP79 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VTA1Q9NP79 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VTA1Q9NP79 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC19.36■□□□□ 0.69
VTA1Q9NP79 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC19.36■□□□□ 0.69
VTA1Q9NP79 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VTA1Q9NP79 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC19.36■□□□□ 0.69
VTA1Q9NP79 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VTA1Q9NP79 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
VTA1Q9NP79 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VTA1Q9NP79 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VTA1Q9NP79 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VTA1Q9NP79 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC19.36■□□□□ 0.69
VTA1Q9NP79 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC19.36■□□□□ 0.69
VTA1Q9NP79 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
VTA1Q9NP79 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC19.36■□□□□ 0.69
VTA1Q9NP79 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC19.36■□□□□ 0.69
VTA1Q9NP79 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
VTA1Q9NP79 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC19.36■□□□□ 0.69
VTA1Q9NP79 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 57 ms