Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
VRK3Q8IV63 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
VRK3Q8IV63 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC17.04■□□□□ 0.32
VRK3Q8IV63 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VRK3Q8IV63 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
VRK3Q8IV63 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VRK3Q8IV63 AC016396.2-201ENST00000562575 1417 ntBASIC17.04■□□□□ 0.32
VRK3Q8IV63 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
VRK3Q8IV63 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC17.04■□□□□ 0.32
VRK3Q8IV63 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VRK3Q8IV63 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VRK3Q8IV63 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VRK3Q8IV63 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
VRK3Q8IV63 PAN3-AS1-201ENST00000563843 1351 ntBASIC17.03■□□□□ 0.32
VRK3Q8IV63 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VRK3Q8IV63 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VRK3Q8IV63 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
VRK3Q8IV63 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VRK3Q8IV63 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC17.03■□□□□ 0.32
VRK3Q8IV63 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
VRK3Q8IV63 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VRK3Q8IV63 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VRK3Q8IV63 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VRK3Q8IV63 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VRK3Q8IV63 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC17.03■□□□□ 0.32
VRK3Q8IV63 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC17.03■□□□□ 0.32
VRK3Q8IV63 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC17.03■□□□□ 0.32
VRK3Q8IV63 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC17.03■□□□□ 0.32
VRK3Q8IV63 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC17.03■□□□□ 0.32
VRK3Q8IV63 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC17.03■□□□□ 0.32
VRK3Q8IV63 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC17.03■□□□□ 0.32
VRK3Q8IV63 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VRK3Q8IV63 RN7SL510P-201ENST00000581311 263 ntBASIC17.03■□□□□ 0.32
VRK3Q8IV63 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC17.03■□□□□ 0.32
VRK3Q8IV63 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
VRK3Q8IV63 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VRK3Q8IV63 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
VRK3Q8IV63 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VRK3Q8IV63 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VRK3Q8IV63 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC17.03■□□□□ 0.32
VRK3Q8IV63 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
VRK3Q8IV63 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VRK3Q8IV63 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC17.03■□□□□ 0.32
VRK3Q8IV63 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
VRK3Q8IV63 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VRK3Q8IV63 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
VRK3Q8IV63 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VRK3Q8IV63 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
VRK3Q8IV63 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
VRK3Q8IV63 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
VRK3Q8IV63 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VRK3Q8IV63 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
VRK3Q8IV63 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
VRK3Q8IV63 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VRK3Q8IV63 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VRK3Q8IV63 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VRK3Q8IV63 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC17.02■□□□□ 0.32
VRK3Q8IV63 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC17.02■□□□□ 0.32
VRK3Q8IV63 AL356309.3-201ENST00000624132 1934 ntBASIC17.02■□□□□ 0.32
VRK3Q8IV63 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
VRK3Q8IV63 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VRK3Q8IV63 AC116353.5-201ENST00000638148 1699 ntBASIC17.02■□□□□ 0.32
VRK3Q8IV63 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
VRK3Q8IV63 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
VRK3Q8IV63 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
VRK3Q8IV63 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
VRK3Q8IV63 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC17.02■□□□□ 0.32
VRK3Q8IV63 PAM16-208ENST00000573553 722 ntTSL 2 BASIC17.02■□□□□ 0.32
VRK3Q8IV63 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
VRK3Q8IV63 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
VRK3Q8IV63 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC17.02■□□□□ 0.32
VRK3Q8IV63 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
VRK3Q8IV63 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
VRK3Q8IV63 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
VRK3Q8IV63 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.31
VRK3Q8IV63 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.02■□□□□ 0.31
VRK3Q8IV63 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
VRK3Q8IV63 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
VRK3Q8IV63 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.31
VRK3Q8IV63 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
VRK3Q8IV63 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.02■□□□□ 0.31
VRK3Q8IV63 BCL2-203ENST00000589955 5011 ntBASIC17.02■□□□□ 0.31
VRK3Q8IV63 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VRK3Q8IV63 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VRK3Q8IV63 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VRK3Q8IV63 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VRK3Q8IV63 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
VRK3Q8IV63 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
VRK3Q8IV63 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
VRK3Q8IV63 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.01■□□□□ 0.31
VRK3Q8IV63 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VRK3Q8IV63 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VRK3Q8IV63 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VRK3Q8IV63 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VRK3Q8IV63 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
VRK3Q8IV63 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC17.01■□□□□ 0.31
VRK3Q8IV63 AC079781.3-201ENST00000449110 356 ntBASIC17.01■□□□□ 0.31
VRK3Q8IV63 SIGLEC30P-201ENST00000455569 941 ntBASIC17.01■□□□□ 0.31
VRK3Q8IV63 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC17.01■□□□□ 0.31
VRK3Q8IV63 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms