Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
SMKR1H3BMG3 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
SMKR1H3BMG3 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SMKR1H3BMG3 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
SMKR1H3BMG3 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC12.8□□□□□ -0.36
SMKR1H3BMG3 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC12.8□□□□□ -0.36
SMKR1H3BMG3 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC12.8□□□□□ -0.36
SMKR1H3BMG3 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC12.8□□□□□ -0.36
SMKR1H3BMG3 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC12.8□□□□□ -0.36
SMKR1H3BMG3 ANKRD26P3-201ENST00000454044 2748 ntBASIC12.8□□□□□ -0.36
SMKR1H3BMG3 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
SMKR1H3BMG3 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
SMKR1H3BMG3 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
SMKR1H3BMG3 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SMKR1H3BMG3 MFAP1P1-201ENST00000442257 1255 ntBASIC12.8□□□□□ -0.36
SMKR1H3BMG3 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SMKR1H3BMG3 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC12.8□□□□□ -0.36
SMKR1H3BMG3 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
SMKR1H3BMG3 RARRES2P10-201ENST00000564312 460 ntBASIC12.8□□□□□ -0.36
SMKR1H3BMG3 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC12.8□□□□□ -0.36
SMKR1H3BMG3 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
SMKR1H3BMG3 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
SMKR1H3BMG3 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SMKR1H3BMG3 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
SMKR1H3BMG3 AC046185.3-201ENST00000623228 1824 ntBASIC12.8□□□□□ -0.36
SMKR1H3BMG3 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SMKR1H3BMG3 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
SMKR1H3BMG3 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC12.8□□□□□ -0.36
SMKR1H3BMG3 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
SMKR1H3BMG3 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
SMKR1H3BMG3 LYSMD4-203ENST00000378904 2122 ntBASIC12.8□□□□□ -0.36
SMKR1H3BMG3 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
SMKR1H3BMG3 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
SMKR1H3BMG3 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC12.8□□□□□ -0.36
SMKR1H3BMG3 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
SMKR1H3BMG3 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC12.8□□□□□ -0.36
SMKR1H3BMG3 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
SMKR1H3BMG3 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
SMKR1H3BMG3 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC12.8□□□□□ -0.36
SMKR1H3BMG3 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC12.8□□□□□ -0.36
SMKR1H3BMG3 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
SMKR1H3BMG3 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC12.8□□□□□ -0.36
SMKR1H3BMG3 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SMKR1H3BMG3 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC12.8□□□□□ -0.36
SMKR1H3BMG3 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
SMKR1H3BMG3 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC12.8□□□□□ -0.36
SMKR1H3BMG3 ACE-204ENST00000428043 5120 ntTSL 2 BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 CASK-202ENST00000378158 3848 ntTSL 5 BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 MESTP1-201ENST00000404287 994 ntBASIC12.79□□□□□ -0.36
SMKR1H3BMG3 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 AC026366.1-201ENST00000488803 879 ntBASIC12.79□□□□□ -0.36
SMKR1H3BMG3 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 AL109923.1-201ENST00000618799 583 ntBASIC12.79□□□□□ -0.36
SMKR1H3BMG3 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 AC103702.1-201ENST00000548801 2630 ntBASIC12.79□□□□□ -0.36
SMKR1H3BMG3 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 AC016396.2-201ENST00000562575 1417 ntBASIC12.79□□□□□ -0.36
SMKR1H3BMG3 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
SMKR1H3BMG3 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
SMKR1H3BMG3 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC12.78□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms