Protein–RNA interactions for Protein: Q9NRR8

CDC42SE1, CDC42 small effector protein 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1Q9NRR8 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
CDC42SE1Q9NRR8 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
CDC42SE1Q9NRR8 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CDC42SE1Q9NRR8 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CDC42SE1Q9NRR8 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
CDC42SE1Q9NRR8 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CDC42SE1Q9NRR8 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CDC42SE1Q9NRR8 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
CDC42SE1Q9NRR8 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC12.71□□□□□ -0.37
CDC42SE1Q9NRR8 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CDC42SE1Q9NRR8 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CDC42SE1Q9NRR8 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CDC42SE1Q9NRR8 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
CDC42SE1Q9NRR8 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC12.71□□□□□ -0.37
CDC42SE1Q9NRR8 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CDC42SE1Q9NRR8 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CDC42SE1Q9NRR8 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CDC42SE1Q9NRR8 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC12.71□□□□□ -0.38
CDC42SE1Q9NRR8 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC12.71□□□□□ -0.38
CDC42SE1Q9NRR8 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.38
CDC42SE1Q9NRR8 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC12.71□□□□□ -0.38
CDC42SE1Q9NRR8 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC12.71□□□□□ -0.38
CDC42SE1Q9NRR8 C1orf229-201ENST00000623686 2258 ntBASIC12.71□□□□□ -0.38
CDC42SE1Q9NRR8 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
CDC42SE1Q9NRR8 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CDC42SE1Q9NRR8 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC12.7□□□□□ -0.38
CDC42SE1Q9NRR8 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CDC42SE1Q9NRR8 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
CDC42SE1Q9NRR8 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
CDC42SE1Q9NRR8 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
CDC42SE1Q9NRR8 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
CDC42SE1Q9NRR8 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC12.7□□□□□ -0.38
CDC42SE1Q9NRR8 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CDC42SE1Q9NRR8 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
CDC42SE1Q9NRR8 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CDC42SE1Q9NRR8 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
CDC42SE1Q9NRR8 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
CDC42SE1Q9NRR8 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC12.69□□□□□ -0.38
CDC42SE1Q9NRR8 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
CDC42SE1Q9NRR8 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CDC42SE1Q9NRR8 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CDC42SE1Q9NRR8 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC12.69□□□□□ -0.38
CDC42SE1Q9NRR8 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
CDC42SE1Q9NRR8 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CDC42SE1Q9NRR8 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CDC42SE1Q9NRR8 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
CDC42SE1Q9NRR8 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CDC42SE1Q9NRR8 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CDC42SE1Q9NRR8 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CDC42SE1Q9NRR8 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CDC42SE1Q9NRR8 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC12.68□□□□□ -0.38
CDC42SE1Q9NRR8 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CDC42SE1Q9NRR8 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
CDC42SE1Q9NRR8 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CDC42SE1Q9NRR8 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CDC42SE1Q9NRR8 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
CDC42SE1Q9NRR8 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
CDC42SE1Q9NRR8 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CDC42SE1Q9NRR8 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CDC42SE1Q9NRR8 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
CDC42SE1Q9NRR8 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC12.67□□□□□ -0.38
CDC42SE1Q9NRR8 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
CDC42SE1Q9NRR8 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CDC42SE1Q9NRR8 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC12.67□□□□□ -0.38
CDC42SE1Q9NRR8 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
CDC42SE1Q9NRR8 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CDC42SE1Q9NRR8 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
CDC42SE1Q9NRR8 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC12.66□□□□□ -0.38
CDC42SE1Q9NRR8 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
CDC42SE1Q9NRR8 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CDC42SE1Q9NRR8 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC12.66□□□□□ -0.38
CDC42SE1Q9NRR8 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC12.66□□□□□ -0.38
CDC42SE1Q9NRR8 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC12.66□□□□□ -0.38
CDC42SE1Q9NRR8 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CDC42SE1Q9NRR8 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC12.66□□□□□ -0.38
CDC42SE1Q9NRR8 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CDC42SE1Q9NRR8 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC12.66□□□□□ -0.38
CDC42SE1Q9NRR8 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CDC42SE1Q9NRR8 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC12.65□□□□□ -0.38
CDC42SE1Q9NRR8 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC12.65□□□□□ -0.38
CDC42SE1Q9NRR8 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CDC42SE1Q9NRR8 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
CDC42SE1Q9NRR8 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC12.65□□□□□ -0.38
CDC42SE1Q9NRR8 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CDC42SE1Q9NRR8 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CDC42SE1Q9NRR8 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
CDC42SE1Q9NRR8 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CDC42SE1Q9NRR8 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC12.65□□□□□ -0.38
CDC42SE1Q9NRR8 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
CDC42SE1Q9NRR8 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC12.65□□□□□ -0.39
CDC42SE1Q9NRR8 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CDC42SE1Q9NRR8 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CDC42SE1Q9NRR8 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CDC42SE1Q9NRR8 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CDC42SE1Q9NRR8 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC12.64□□□□□ -0.39
CDC42SE1Q9NRR8 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CDC42SE1Q9NRR8 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC12.64□□□□□ -0.39
CDC42SE1Q9NRR8 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CDC42SE1Q9NRR8 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CDC42SE1Q9NRR8 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 66 ms