Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
VPS52Q8N1B4 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
VPS52Q8N1B4 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC26.37■■□□□ 1.81
VPS52Q8N1B4 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
VPS52Q8N1B4 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC26.36■■□□□ 1.81
VPS52Q8N1B4 BEX3-202ENST00000372634 753 ntTSL 2 BASIC26.36■■□□□ 1.81
VPS52Q8N1B4 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC26.36■■□□□ 1.81
VPS52Q8N1B4 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
VPS52Q8N1B4 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC26.36■■□□□ 1.81
VPS52Q8N1B4 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC26.36■■□□□ 1.81
VPS52Q8N1B4 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC26.36■■□□□ 1.81
VPS52Q8N1B4 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
VPS52Q8N1B4 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
VPS52Q8N1B4 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
VPS52Q8N1B4 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
VPS52Q8N1B4 HYI-210ENST00000486909 905 ntTSL 5 BASIC26.34■■□□□ 1.81
VPS52Q8N1B4 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC26.34■■□□□ 1.81
VPS52Q8N1B4 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
VPS52Q8N1B4 TRIR-205ENST00000592273 783 ntTSL 3 BASIC26.34■■□□□ 1.81
VPS52Q8N1B4 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC26.34■■□□□ 1.81
VPS52Q8N1B4 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
VPS52Q8N1B4 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC26.33■■□□□ 1.81
VPS52Q8N1B4 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
VPS52Q8N1B4 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC26.33■■□□□ 1.81
VPS52Q8N1B4 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
VPS52Q8N1B4 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
VPS52Q8N1B4 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
VPS52Q8N1B4 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC26.33■■□□□ 1.81
VPS52Q8N1B4 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC26.33■■□□□ 1.81
VPS52Q8N1B4 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
VPS52Q8N1B4 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC26.32■■□□□ 1.8
VPS52Q8N1B4 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC26.32■■□□□ 1.8
VPS52Q8N1B4 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
VPS52Q8N1B4 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC26.32■■□□□ 1.8
VPS52Q8N1B4 YBX1P4-201ENST00000392794 808 ntBASIC26.31■■□□□ 1.8
VPS52Q8N1B4 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC26.31■■□□□ 1.8
VPS52Q8N1B4 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC26.31■■□□□ 1.8
VPS52Q8N1B4 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
VPS52Q8N1B4 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
VPS52Q8N1B4 AC103834.1-201ENST00000520383 144 ntBASIC26.3■■□□□ 1.8
VPS52Q8N1B4 PVT1_1.1-201ENST00000615125 194 ntBASIC26.3■■□□□ 1.8
VPS52Q8N1B4 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
VPS52Q8N1B4 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
VPS52Q8N1B4 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC26.29■■□□□ 1.8
VPS52Q8N1B4 WHAMMP3-201ENST00000611636 1609 ntBASIC26.28■■□□□ 1.8
VPS52Q8N1B4 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC26.28■■□□□ 1.8
VPS52Q8N1B4 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
VPS52Q8N1B4 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
VPS52Q8N1B4 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
VPS52Q8N1B4 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
VPS52Q8N1B4 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
VPS52Q8N1B4 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
VPS52Q8N1B4 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC26.26■■□□□ 1.79
VPS52Q8N1B4 IDNK-203ENST00000405990 629 ntTSL 2 BASIC26.26■■□□□ 1.79
VPS52Q8N1B4 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
VPS52Q8N1B4 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC26.26■■□□□ 1.79
VPS52Q8N1B4 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
VPS52Q8N1B4 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
VPS52Q8N1B4 AC009299.2-201ENST00000482477 511 ntBASIC26.25■■□□□ 1.79
VPS52Q8N1B4 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
VPS52Q8N1B4 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
VPS52Q8N1B4 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC26.24■■□□□ 1.79
VPS52Q8N1B4 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC26.24■■□□□ 1.79
VPS52Q8N1B4 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
VPS52Q8N1B4 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
VPS52Q8N1B4 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
VPS52Q8N1B4 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC26.23■■□□□ 1.79
VPS52Q8N1B4 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
VPS52Q8N1B4 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
VPS52Q8N1B4 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC26.23■■□□□ 1.79
VPS52Q8N1B4 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
VPS52Q8N1B4 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
VPS52Q8N1B4 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
VPS52Q8N1B4 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
VPS52Q8N1B4 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
VPS52Q8N1B4 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC26.22■■□□□ 1.79
VPS52Q8N1B4 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC26.22■■□□□ 1.79
VPS52Q8N1B4 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC26.22■■□□□ 1.79
VPS52Q8N1B4 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC26.22■■□□□ 1.79
VPS52Q8N1B4 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
VPS52Q8N1B4 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
VPS52Q8N1B4 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC26.21■■□□□ 1.79
VPS52Q8N1B4 PROC-203ENST00000409048 1586 ntTSL 5 BASIC26.21■■□□□ 1.79
VPS52Q8N1B4 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
VPS52Q8N1B4 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC26.21■■□□□ 1.79
VPS52Q8N1B4 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC26.21■■□□□ 1.79
VPS52Q8N1B4 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
VPS52Q8N1B4 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
VPS52Q8N1B4 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.79
VPS52Q8N1B4 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC26.2■■□□□ 1.79
VPS52Q8N1B4 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC26.2■■□□□ 1.79
VPS52Q8N1B4 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC26.2■■□□□ 1.79
VPS52Q8N1B4 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
VPS52Q8N1B4 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
VPS52Q8N1B4 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC26.2■■□□□ 1.78
VPS52Q8N1B4 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
VPS52Q8N1B4 MIR4508-201ENST00000584178 70 ntBASIC26.2■■□□□ 1.78
VPS52Q8N1B4 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC26.19■■□□□ 1.78
VPS52Q8N1B4 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
VPS52Q8N1B4 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC26.19■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 13.2 ms