Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 THA1P-201ENST00000590384 1145 ntBASIC27.4■■□□□ 1.98
NKX3-2P78367 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
NKX3-2P78367 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC27.4■■□□□ 1.98
NKX3-2P78367 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
NKX3-2P78367 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
NKX3-2P78367 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC27.39■■□□□ 1.98
NKX3-2P78367 RPS2P7-201ENST00000447334 885 ntBASIC27.39■■□□□ 1.98
NKX3-2P78367 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC27.39■■□□□ 1.98
NKX3-2P78367 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.97
NKX3-2P78367 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
NKX3-2P78367 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
NKX3-2P78367 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
NKX3-2P78367 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC27.38■■□□□ 1.97
NKX3-2P78367 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC27.38■■□□□ 1.97
NKX3-2P78367 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
NKX3-2P78367 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
NKX3-2P78367 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC27.36■■□□□ 1.97
NKX3-2P78367 AC131212.1-201ENST00000613771 668 ntBASIC27.36■■□□□ 1.97
NKX3-2P78367 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC27.36■■□□□ 1.97
NKX3-2P78367 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
NKX3-2P78367 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC27.35■■□□□ 1.97
NKX3-2P78367 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC27.35■■□□□ 1.97
NKX3-2P78367 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC27.35■■□□□ 1.97
NKX3-2P78367 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC27.35■■□□□ 1.97
NKX3-2P78367 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
NKX3-2P78367 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
NKX3-2P78367 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC27.34■■□□□ 1.97
NKX3-2P78367 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC27.34■■□□□ 1.97
NKX3-2P78367 Z92544.1-202ENST00000571933 1220 ntBASIC27.34■■□□□ 1.97
NKX3-2P78367 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
NKX3-2P78367 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
NKX3-2P78367 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC27.33■■□□□ 1.97
NKX3-2P78367 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC27.33■■□□□ 1.97
NKX3-2P78367 AL356441.2-201ENST00000443009 864 ntBASIC27.33■■□□□ 1.97
NKX3-2P78367 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
NKX3-2P78367 TK2-216ENST00000564917 1156 ntTSL 3 BASIC27.33■■□□□ 1.97
NKX3-2P78367 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
NKX3-2P78367 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC27.33■■□□□ 1.97
NKX3-2P78367 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC27.33■■□□□ 1.97
NKX3-2P78367 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
NKX3-2P78367 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
NKX3-2P78367 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC27.32■■□□□ 1.96
NKX3-2P78367 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC27.32■■□□□ 1.96
NKX3-2P78367 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC27.32■■□□□ 1.96
NKX3-2P78367 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC27.32■■□□□ 1.96
NKX3-2P78367 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
NKX3-2P78367 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
NKX3-2P78367 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC27.31■■□□□ 1.96
NKX3-2P78367 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC27.31■■□□□ 1.96
NKX3-2P78367 RNF146-205ENST00000477776 762 ntTSL 3 BASIC27.3■■□□□ 1.96
NKX3-2P78367 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC27.3■■□□□ 1.96
NKX3-2P78367 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC27.3■■□□□ 1.96
NKX3-2P78367 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC27.29■■□□□ 1.96
NKX3-2P78367 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC27.29■■□□□ 1.96
NKX3-2P78367 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC27.29■■□□□ 1.96
NKX3-2P78367 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC27.29■■□□□ 1.96
NKX3-2P78367 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC27.29■■□□□ 1.96
NKX3-2P78367 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC27.28■■□□□ 1.96
NKX3-2P78367 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC27.28■■□□□ 1.96
NKX3-2P78367 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
NKX3-2P78367 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC27.28■■□□□ 1.96
NKX3-2P78367 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC27.28■■□□□ 1.96
NKX3-2P78367 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
NKX3-2P78367 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
NKX3-2P78367 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC27.27■■□□□ 1.96
NKX3-2P78367 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.96
NKX3-2P78367 AC019069.1-201ENST00000610008 1333 ntBASIC27.26■■□□□ 1.95
NKX3-2P78367 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
NKX3-2P78367 KRT18P10-201ENST00000388836 1287 ntBASIC27.26■■□□□ 1.95
NKX3-2P78367 MTURN-203ENST00000409688 843 ntTSL 2 BASIC27.26■■□□□ 1.95
NKX3-2P78367 AC239859.2-201ENST00000444165 318 ntBASIC27.26■■□□□ 1.95
NKX3-2P78367 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC27.26■■□□□ 1.95
NKX3-2P78367 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
NKX3-2P78367 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC27.25■■□□□ 1.95
NKX3-2P78367 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC27.25■■□□□ 1.95
NKX3-2P78367 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC27.25■■□□□ 1.95
NKX3-2P78367 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
NKX3-2P78367 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
NKX3-2P78367 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
NKX3-2P78367 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC27.24■■□□□ 1.95
NKX3-2P78367 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
NKX3-2P78367 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC27.23■■□□□ 1.95
NKX3-2P78367 AC022616.5-201ENST00000518796 181 ntBASIC27.23■■□□□ 1.95
NKX3-2P78367 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC27.23■■□□□ 1.95
NKX3-2P78367 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
NKX3-2P78367 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
NKX3-2P78367 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC27.22■■□□□ 1.95
NKX3-2P78367 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC27.22■■□□□ 1.95
NKX3-2P78367 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC27.22■■□□□ 1.95
NKX3-2P78367 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
NKX3-2P78367 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC27.21■■□□□ 1.95
NKX3-2P78367 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
NKX3-2P78367 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC27.21■■□□□ 1.95
NKX3-2P78367 CREM-229ENST00000474362 1030 ntTSL 2 BASIC27.21■■□□□ 1.95
NKX3-2P78367 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
NKX3-2P78367 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.95
NKX3-2P78367 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC27.2■■□□□ 1.95
NKX3-2P78367 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
NKX3-2P78367 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC27.2■■□□□ 1.94
NKX3-2P78367 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
Retrieved 100 of 98,524 protein–RNA pairs in 11.4 ms