Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC26.24■■□□□ 1.79
SCN1AP35498 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
SCN1AP35498 SPCS2P3-201ENST00000500401 656 ntBASIC26.24■■□□□ 1.79
SCN1AP35498 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC26.23■■□□□ 1.79
SCN1AP35498 AP004609.3-201ENST00000610705 1884 ntBASIC26.23■■□□□ 1.79
SCN1AP35498 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
SCN1AP35498 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
SCN1AP35498 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC26.23■■□□□ 1.79
SCN1AP35498 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC26.23■■□□□ 1.79
SCN1AP35498 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
SCN1AP35498 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC26.23■■□□□ 1.79
SCN1AP35498 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC26.22■■□□□ 1.79
SCN1AP35498 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC26.22■■□□□ 1.79
SCN1AP35498 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
SCN1AP35498 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
SCN1AP35498 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
SCN1AP35498 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
SCN1AP35498 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
SCN1AP35498 DUX4L9-201ENST00000449051 1259 ntBASIC26.21■■□□□ 1.79
SCN1AP35498 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC26.2■■□□□ 1.79
SCN1AP35498 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
SCN1AP35498 AL033527.3-201ENST00000566366 1196 ntBASIC26.2■■□□□ 1.78
SCN1AP35498 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
SCN1AP35498 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
SCN1AP35498 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC26.2■■□□□ 1.78
SCN1AP35498 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
SCN1AP35498 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
SCN1AP35498 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
SCN1AP35498 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
SCN1AP35498 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC26.19■■□□□ 1.78
SCN1AP35498 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC26.19■■□□□ 1.78
SCN1AP35498 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
SCN1AP35498 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC26.18■■□□□ 1.78
SCN1AP35498 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
SCN1AP35498 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC26.17■■□□□ 1.78
SCN1AP35498 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC26.17■■□□□ 1.78
SCN1AP35498 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
SCN1AP35498 AC004987.1-201ENST00000428627 508 ntBASIC26.17■■□□□ 1.78
SCN1AP35498 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC26.16■■□□□ 1.78
SCN1AP35498 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC26.16■■□□□ 1.78
SCN1AP35498 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC26.16■■□□□ 1.78
SCN1AP35498 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
SCN1AP35498 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC26.16■■□□□ 1.78
SCN1AP35498 TSPY13P-201ENST00000338964 914 ntBASIC26.15■■□□□ 1.78
SCN1AP35498 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
SCN1AP35498 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
SCN1AP35498 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC26.15■■□□□ 1.78
SCN1AP35498 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC26.15■■□□□ 1.78
SCN1AP35498 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
SCN1AP35498 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC26.15■■□□□ 1.78
SCN1AP35498 AL121749.1-202ENST00000609313 2153 ntBASIC26.15■■□□□ 1.78
SCN1AP35498 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC26.14■■□□□ 1.78
SCN1AP35498 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
SCN1AP35498 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC26.14■■□□□ 1.78
SCN1AP35498 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC26.14■■□□□ 1.77
SCN1AP35498 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC26.14■■□□□ 1.77
SCN1AP35498 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC26.14■■□□□ 1.77
SCN1AP35498 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC26.14■■□□□ 1.77
SCN1AP35498 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
SCN1AP35498 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
SCN1AP35498 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC26.13■■□□□ 1.77
SCN1AP35498 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC26.12■■□□□ 1.77
SCN1AP35498 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC26.12■■□□□ 1.77
SCN1AP35498 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
SCN1AP35498 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
SCN1AP35498 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
SCN1AP35498 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC26.12■■□□□ 1.77
SCN1AP35498 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC26.12■■□□□ 1.77
SCN1AP35498 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC26.11■■□□□ 1.77
SCN1AP35498 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC26.11■■□□□ 1.77
SCN1AP35498 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
SCN1AP35498 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
SCN1AP35498 ATP5G2P3-201ENST00000429083 425 ntBASIC26.1■■□□□ 1.77
SCN1AP35498 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC26.1■■□□□ 1.77
SCN1AP35498 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC26.09■■□□□ 1.77
SCN1AP35498 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC26.09■■□□□ 1.77
SCN1AP35498 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC26.09■■□□□ 1.77
SCN1AP35498 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC26.09■■□□□ 1.77
SCN1AP35498 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC26.09■■□□□ 1.77
SCN1AP35498 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
SCN1AP35498 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC26.09■■□□□ 1.77
SCN1AP35498 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
SCN1AP35498 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
SCN1AP35498 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC26.09■■□□□ 1.77
SCN1AP35498 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
SCN1AP35498 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
SCN1AP35498 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC26.08■■□□□ 1.77
SCN1AP35498 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
SCN1AP35498 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
SCN1AP35498 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC26.08■■□□□ 1.77
SCN1AP35498 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC26.08■■□□□ 1.77
SCN1AP35498 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC26.08■■□□□ 1.77
SCN1AP35498 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
SCN1AP35498 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC26.08■■□□□ 1.77
SCN1AP35498 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
SCN1AP35498 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.76
SCN1AP35498 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
SCN1AP35498 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
SCN1AP35498 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
SCN1AP35498 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC26.07■■□□□ 1.76
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms