Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
HLA-DQA1P01909 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DQA1P01909 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DQA1P01909 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DQA1P01909 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DQA1P01909 AC022211.4-201ENST00000625094 2161 ntBASIC18.22■□□□□ 0.51
HLA-DQA1P01909 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DQA1P01909 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DQA1P01909 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC18.22■□□□□ 0.51
HLA-DQA1P01909 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DQA1P01909 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DQA1P01909 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HLA-DQA1P01909 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC18.21■□□□□ 0.51
HLA-DQA1P01909 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
HLA-DQA1P01909 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HLA-DQA1P01909 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
HLA-DQA1P01909 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HLA-DQA1P01909 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
HLA-DQA1P01909 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC18.2■□□□□ 0.5
HLA-DQA1P01909 CLDN5-201ENST00000403084 2357 ntBASIC18.2■□□□□ 0.5
HLA-DQA1P01909 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC18.2■□□□□ 0.5
HLA-DQA1P01909 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
HLA-DQA1P01909 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HLA-DQA1P01909 WHAMMP3-201ENST00000611636 1609 ntBASIC18.2■□□□□ 0.5
HLA-DQA1P01909 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DQA1P01909 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
HLA-DQA1P01909 CASK-201ENST00000378154 2494 ntTSL 5 BASIC18.19■□□□□ 0.5
HLA-DQA1P01909 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
HLA-DQA1P01909 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DQA1P01909 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DQA1P01909 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC18.19■□□□□ 0.5
HLA-DQA1P01909 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DQA1P01909 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DQA1P01909 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC18.18■□□□□ 0.5
HLA-DQA1P01909 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC18.18■□□□□ 0.5
HLA-DQA1P01909 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DQA1P01909 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC18.18■□□□□ 0.5
HLA-DQA1P01909 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC18.18■□□□□ 0.5
HLA-DQA1P01909 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DQA1P01909 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HLA-DQA1P01909 AC010501.1-201ENST00000606270 1962 ntBASIC18.17■□□□□ 0.5
HLA-DQA1P01909 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HLA-DQA1P01909 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
HLA-DQA1P01909 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC18.17■□□□□ 0.5
HLA-DQA1P01909 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HLA-DQA1P01909 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HLA-DQA1P01909 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
HLA-DQA1P01909 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HLA-DQA1P01909 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HLA-DQA1P01909 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HLA-DQA1P01909 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
HLA-DQA1P01909 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC18.16■□□□□ 0.5
HLA-DQA1P01909 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC18.16■□□□□ 0.5
HLA-DQA1P01909 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HLA-DQA1P01909 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DQA1P01909 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DQA1P01909 SETD8P1-201ENST00000623146 1180 ntBASIC18.15■□□□□ 0.5
HLA-DQA1P01909 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DQA1P01909 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC18.15■□□□□ 0.5
HLA-DQA1P01909 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DQA1P01909 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DQA1P01909 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DQA1P01909 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DQA1P01909 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC18.15■□□□□ 0.5
HLA-DQA1P01909 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
HLA-DQA1P01909 MEST-211ENST00000437945 1455 ntTSL 5 BASIC18.14■□□□□ 0.5
HLA-DQA1P01909 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
HLA-DQA1P01909 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
HLA-DQA1P01909 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HLA-DQA1P01909 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HLA-DQA1P01909 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HLA-DQA1P01909 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC18.13■□□□□ 0.49
HLA-DQA1P01909 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HLA-DQA1P01909 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HLA-DQA1P01909 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HLA-DQA1P01909 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
HLA-DQA1P01909 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
HLA-DQA1P01909 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
HLA-DQA1P01909 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
HLA-DQA1P01909 AC142472.1-201ENST00000612013 1741 ntBASIC18.12■□□□□ 0.49
HLA-DQA1P01909 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HLA-DQA1P01909 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HLA-DQA1P01909 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC18.12■□□□□ 0.49
HLA-DQA1P01909 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HLA-DQA1P01909 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC18.12■□□□□ 0.49
HLA-DQA1P01909 AL133380.1-201ENST00000506013 324 ntBASIC18.11■□□□□ 0.49
HLA-DQA1P01909 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
HLA-DQA1P01909 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC18.11■□□□□ 0.49
HLA-DQA1P01909 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC18.11■□□□□ 0.49
HLA-DQA1P01909 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
HLA-DQA1P01909 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HLA-DQA1P01909 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HLA-DQA1P01909 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HLA-DQA1P01909 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
HLA-DQA1P01909 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HLA-DQA1P01909 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HLA-DQA1P01909 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HLA-DQA1P01909 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HLA-DQA1P01909 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HLA-DQA1P01909 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms