Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC30.86■■■□□ 2.53
NPHP1O15259 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
NPHP1O15259 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
NPHP1O15259 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
NPHP1O15259 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
NPHP1O15259 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC30.86■■■□□ 2.53
NPHP1O15259 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC30.85■■■□□ 2.53
NPHP1O15259 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC30.84■■■□□ 2.53
NPHP1O15259 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
NPHP1O15259 RNF146-205ENST00000477776 762 ntTSL 3 BASIC30.84■■■□□ 2.53
NPHP1O15259 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
NPHP1O15259 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC30.84■■■□□ 2.53
NPHP1O15259 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
NPHP1O15259 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC30.83■■■□□ 2.53
NPHP1O15259 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC30.83■■■□□ 2.53
NPHP1O15259 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC30.83■■■□□ 2.53
NPHP1O15259 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
NPHP1O15259 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC30.82■■■□□ 2.52
NPHP1O15259 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC30.82■■■□□ 2.52
NPHP1O15259 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC30.82■■■□□ 2.52
NPHP1O15259 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC30.81■■■□□ 2.52
NPHP1O15259 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
NPHP1O15259 AL356441.2-201ENST00000443009 864 ntBASIC30.81■■■□□ 2.52
NPHP1O15259 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC30.81■■■□□ 2.52
NPHP1O15259 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC30.81■■■□□ 2.52
NPHP1O15259 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC30.8■■■□□ 2.52
NPHP1O15259 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC30.8■■■□□ 2.52
NPHP1O15259 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
NPHP1O15259 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
NPHP1O15259 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
NPHP1O15259 AC239859.2-201ENST00000444165 318 ntBASIC30.79■■■□□ 2.52
NPHP1O15259 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC30.79■■■□□ 2.52
NPHP1O15259 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
NPHP1O15259 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC30.79■■■□□ 2.52
NPHP1O15259 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
NPHP1O15259 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC30.78■■■□□ 2.52
NPHP1O15259 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC30.78■■■□□ 2.52
NPHP1O15259 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC30.78■■■□□ 2.52
NPHP1O15259 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
NPHP1O15259 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC30.78■■■□□ 2.52
NPHP1O15259 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC30.78■■■□□ 2.52
NPHP1O15259 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC30.78■■■□□ 2.52
NPHP1O15259 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC30.77■■■□□ 2.52
NPHP1O15259 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC30.77■■■□□ 2.52
NPHP1O15259 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC30.76■■■□□ 2.51
NPHP1O15259 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
NPHP1O15259 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC30.75■■■□□ 2.51
NPHP1O15259 AC087393.1-201ENST00000582896 145 ntBASIC30.75■■■□□ 2.51
NPHP1O15259 AC019171.1-201ENST00000601251 1056 ntBASIC30.75■■■□□ 2.51
NPHP1O15259 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC30.75■■■□□ 2.51
NPHP1O15259 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
NPHP1O15259 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC30.74■■■□□ 2.51
NPHP1O15259 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
NPHP1O15259 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC30.74■■■□□ 2.51
NPHP1O15259 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC30.74■■■□□ 2.51
NPHP1O15259 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC30.74■■■□□ 2.51
NPHP1O15259 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
NPHP1O15259 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
NPHP1O15259 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
NPHP1O15259 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
NPHP1O15259 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC30.73■■■□□ 2.51
NPHP1O15259 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
NPHP1O15259 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC30.72■■■□□ 2.51
NPHP1O15259 TK2-216ENST00000564917 1156 ntTSL 3 BASIC30.72■■■□□ 2.51
NPHP1O15259 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC30.72■■■□□ 2.51
NPHP1O15259 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC30.72■■■□□ 2.51
NPHP1O15259 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC30.71■■■□□ 2.51
NPHP1O15259 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
NPHP1O15259 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
NPHP1O15259 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC30.7■■■□□ 2.51
NPHP1O15259 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC30.7■■■□□ 2.51
NPHP1O15259 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC30.7■■■□□ 2.51
NPHP1O15259 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC30.7■■■□□ 2.5
NPHP1O15259 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
NPHP1O15259 RPS2P7-201ENST00000447334 885 ntBASIC30.69■■■□□ 2.5
NPHP1O15259 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
NPHP1O15259 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC30.69■■■□□ 2.5
NPHP1O15259 ABCB10P1-201ENST00000614297 2181 ntBASIC30.69■■■□□ 2.5
NPHP1O15259 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC30.68■■■□□ 2.5
NPHP1O15259 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
NPHP1O15259 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC30.68■■■□□ 2.5
NPHP1O15259 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC30.67■■■□□ 2.5
NPHP1O15259 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC30.67■■■□□ 2.5
NPHP1O15259 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC30.67■■■□□ 2.5
NPHP1O15259 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
NPHP1O15259 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC30.66■■■□□ 2.5
NPHP1O15259 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
NPHP1O15259 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
NPHP1O15259 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
NPHP1O15259 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
NPHP1O15259 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC30.64■■■□□ 2.5
NPHP1O15259 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC30.64■■■□□ 2.5
NPHP1O15259 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC30.64■■■□□ 2.5
NPHP1O15259 Z92544.1-202ENST00000571933 1220 ntBASIC30.64■■■□□ 2.5
NPHP1O15259 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC30.63■■■□□ 2.49
NPHP1O15259 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
NPHP1O15259 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
NPHP1O15259 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
NPHP1O15259 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
NPHP1O15259 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC30.63■■■□□ 2.49
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms