Protein–RNA interactions for Protein: A0A0B4J263

TRAV39, T-cell receptor alpha variable 39 (Fragment), humanhuman

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV39A0A0B4J263 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRAV39A0A0B4J263 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC20.36■□□□□ 0.85
TRAV39A0A0B4J263 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRAV39A0A0B4J263 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRAV39A0A0B4J263 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TRAV39A0A0B4J263 MACF1-219ENST00000484793 834 ntTSL 2 BASIC20.36■□□□□ 0.85
TRAV39A0A0B4J263 DUSP8P4-201ENST00000399538 1761 ntBASIC20.36■□□□□ 0.85
TRAV39A0A0B4J263 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC20.35■□□□□ 0.85
TRAV39A0A0B4J263 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRAV39A0A0B4J263 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRAV39A0A0B4J263 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TRAV39A0A0B4J263 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRAV39A0A0B4J263 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TRAV39A0A0B4J263 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRAV39A0A0B4J263 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC20.35■□□□□ 0.85
TRAV39A0A0B4J263 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC20.35■□□□□ 0.85
TRAV39A0A0B4J263 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC20.35■□□□□ 0.85
TRAV39A0A0B4J263 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRAV39A0A0B4J263 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
TRAV39A0A0B4J263 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TRAV39A0A0B4J263 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC20.34■□□□□ 0.85
TRAV39A0A0B4J263 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC20.34■□□□□ 0.85
TRAV39A0A0B4J263 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC20.34■□□□□ 0.85
TRAV39A0A0B4J263 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
TRAV39A0A0B4J263 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
TRAV39A0A0B4J263 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
TRAV39A0A0B4J263 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
TRAV39A0A0B4J263 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC20.33■□□□□ 0.85
TRAV39A0A0B4J263 AC020928.2-201ENST00000588717 2197 ntBASIC20.33■□□□□ 0.85
TRAV39A0A0B4J263 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
TRAV39A0A0B4J263 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC20.33■□□□□ 0.84
TRAV39A0A0B4J263 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC20.33■□□□□ 0.84
TRAV39A0A0B4J263 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
TRAV39A0A0B4J263 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRAV39A0A0B4J263 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
TRAV39A0A0B4J263 AL359504.2-201ENST00000605506 1601 ntBASIC20.32■□□□□ 0.84
TRAV39A0A0B4J263 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC20.32■□□□□ 0.84
TRAV39A0A0B4J263 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRAV39A0A0B4J263 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC20.32■□□□□ 0.84
TRAV39A0A0B4J263 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TRAV39A0A0B4J263 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRAV39A0A0B4J263 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRAV39A0A0B4J263 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRAV39A0A0B4J263 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRAV39A0A0B4J263 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRAV39A0A0B4J263 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRAV39A0A0B4J263 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRAV39A0A0B4J263 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
TRAV39A0A0B4J263 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
TRAV39A0A0B4J263 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRAV39A0A0B4J263 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRAV39A0A0B4J263 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRAV39A0A0B4J263 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
TRAV39A0A0B4J263 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC20.28■□□□□ 0.84
TRAV39A0A0B4J263 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRAV39A0A0B4J263 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TRAV39A0A0B4J263 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRAV39A0A0B4J263 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRAV39A0A0B4J263 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
TRAV39A0A0B4J263 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRAV39A0A0B4J263 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRAV39A0A0B4J263 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC20.27■□□□□ 0.84
TRAV39A0A0B4J263 RPS2-202ENST00000526522 924 ntTSL 2 BASIC20.27■□□□□ 0.84
TRAV39A0A0B4J263 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
TRAV39A0A0B4J263 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC20.27■□□□□ 0.84
TRAV39A0A0B4J263 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRAV39A0A0B4J263 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
TRAV39A0A0B4J263 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRAV39A0A0B4J263 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRAV39A0A0B4J263 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TRAV39A0A0B4J263 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRAV39A0A0B4J263 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
TRAV39A0A0B4J263 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC20.26■□□□□ 0.83
TRAV39A0A0B4J263 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRAV39A0A0B4J263 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC20.26■□□□□ 0.83
TRAV39A0A0B4J263 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRAV39A0A0B4J263 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRAV39A0A0B4J263 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC20.25■□□□□ 0.83
TRAV39A0A0B4J263 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRAV39A0A0B4J263 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TRAV39A0A0B4J263 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC20.24■□□□□ 0.83
TRAV39A0A0B4J263 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRAV39A0A0B4J263 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TRAV39A0A0B4J263 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRAV39A0A0B4J263 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TRAV39A0A0B4J263 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC20.23■□□□□ 0.83
TRAV39A0A0B4J263 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC20.23■□□□□ 0.83
TRAV39A0A0B4J263 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRAV39A0A0B4J263 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRAV39A0A0B4J263 AC010501.1-201ENST00000606270 1962 ntBASIC20.21■□□□□ 0.83
TRAV39A0A0B4J263 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRAV39A0A0B4J263 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
TRAV39A0A0B4J263 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TRAV39A0A0B4J263 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
TRAV39A0A0B4J263 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC20.21■□□□□ 0.83
TRAV39A0A0B4J263 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC20.21■□□□□ 0.83
TRAV39A0A0B4J263 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRAV39A0A0B4J263 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
TRAV39A0A0B4J263 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC20.2■□□□□ 0.82
TRAV39A0A0B4J263 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 143.2 ms