Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC21.2■□□□□ 0.98
TRAV1-2A0A0B4J238 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TRAV1-2A0A0B4J238 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
TRAV1-2A0A0B4J238 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TRAV1-2A0A0B4J238 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TRAV1-2A0A0B4J238 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC21.19■□□□□ 0.98
TRAV1-2A0A0B4J238 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TRAV1-2A0A0B4J238 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRAV1-2A0A0B4J238 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRAV1-2A0A0B4J238 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
TRAV1-2A0A0B4J238 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC21.18■□□□□ 0.98
TRAV1-2A0A0B4J238 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
TRAV1-2A0A0B4J238 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TRAV1-2A0A0B4J238 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TRAV1-2A0A0B4J238 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TRAV1-2A0A0B4J238 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC21.17■□□□□ 0.98
TRAV1-2A0A0B4J238 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
TRAV1-2A0A0B4J238 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC21.16■□□□□ 0.98
TRAV1-2A0A0B4J238 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRAV1-2A0A0B4J238 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC21.16■□□□□ 0.98
TRAV1-2A0A0B4J238 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRAV1-2A0A0B4J238 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TRAV1-2A0A0B4J238 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC21.15■□□□□ 0.98
TRAV1-2A0A0B4J238 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRAV1-2A0A0B4J238 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRAV1-2A0A0B4J238 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC21.15■□□□□ 0.98
TRAV1-2A0A0B4J238 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
TRAV1-2A0A0B4J238 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
TRAV1-2A0A0B4J238 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC21.14■□□□□ 0.98
TRAV1-2A0A0B4J238 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC21.14■□□□□ 0.98
TRAV1-2A0A0B4J238 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC21.14■□□□□ 0.98
TRAV1-2A0A0B4J238 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
TRAV1-2A0A0B4J238 SUZ12P1-203ENST00000578195 985 ntBASIC21.14■□□□□ 0.97
TRAV1-2A0A0B4J238 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRAV1-2A0A0B4J238 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRAV1-2A0A0B4J238 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
TRAV1-2A0A0B4J238 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRAV1-2A0A0B4J238 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRAV1-2A0A0B4J238 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRAV1-2A0A0B4J238 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TRAV1-2A0A0B4J238 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC21.13■□□□□ 0.97
TRAV1-2A0A0B4J238 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRAV1-2A0A0B4J238 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRAV1-2A0A0B4J238 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TRAV1-2A0A0B4J238 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC21.12■□□□□ 0.97
TRAV1-2A0A0B4J238 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC21.12■□□□□ 0.97
TRAV1-2A0A0B4J238 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRAV1-2A0A0B4J238 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TRAV1-2A0A0B4J238 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TRAV1-2A0A0B4J238 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TRAV1-2A0A0B4J238 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRAV1-2A0A0B4J238 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRAV1-2A0A0B4J238 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRAV1-2A0A0B4J238 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
TRAV1-2A0A0B4J238 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
TRAV1-2A0A0B4J238 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRAV1-2A0A0B4J238 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRAV1-2A0A0B4J238 AC096887.2-201ENST00000623443 1957 ntBASIC21.1■□□□□ 0.97
TRAV1-2A0A0B4J238 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TRAV1-2A0A0B4J238 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRAV1-2A0A0B4J238 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
TRAV1-2A0A0B4J238 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRAV1-2A0A0B4J238 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRAV1-2A0A0B4J238 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC21.09■□□□□ 0.97
TRAV1-2A0A0B4J238 DUX4L28-201ENST00000623687 678 ntBASIC21.09■□□□□ 0.97
TRAV1-2A0A0B4J238 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRAV1-2A0A0B4J238 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TRAV1-2A0A0B4J238 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
TRAV1-2A0A0B4J238 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
TRAV1-2A0A0B4J238 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRAV1-2A0A0B4J238 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRAV1-2A0A0B4J238 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRAV1-2A0A0B4J238 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC21.07■□□□□ 0.96
TRAV1-2A0A0B4J238 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC21.07■□□□□ 0.96
TRAV1-2A0A0B4J238 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRAV1-2A0A0B4J238 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TRAV1-2A0A0B4J238 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRAV1-2A0A0B4J238 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRAV1-2A0A0B4J238 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC21.06■□□□□ 0.96
TRAV1-2A0A0B4J238 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
TRAV1-2A0A0B4J238 RPS2-210ENST00000530225 765 ntTSL 2 BASIC21.06■□□□□ 0.96
TRAV1-2A0A0B4J238 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRAV1-2A0A0B4J238 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC21.06■□□□□ 0.96
TRAV1-2A0A0B4J238 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRAV1-2A0A0B4J238 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRAV1-2A0A0B4J238 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
TRAV1-2A0A0B4J238 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TRAV1-2A0A0B4J238 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRAV1-2A0A0B4J238 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TRAV1-2A0A0B4J238 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TRAV1-2A0A0B4J238 EED-207ENST00000528180 1745 ntTSL 5 BASIC21.05■□□□□ 0.96
TRAV1-2A0A0B4J238 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRAV1-2A0A0B4J238 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRAV1-2A0A0B4J238 CIB2-204ENST00000557846 934 ntTSL 3 BASIC21.05■□□□□ 0.96
TRAV1-2A0A0B4J238 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC21.05■□□□□ 0.96
TRAV1-2A0A0B4J238 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC21.05■□□□□ 0.96
TRAV1-2A0A0B4J238 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TRAV1-2A0A0B4J238 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
TRAV1-2A0A0B4J238 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
TRAV1-2A0A0B4J238 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 12.3 ms