Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
LRRC40Q9H9A6 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.81■□□□□ 0.44
LRRC40Q9H9A6 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LRRC40Q9H9A6 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LRRC40Q9H9A6 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LRRC40Q9H9A6 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
LRRC40Q9H9A6 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LRRC40Q9H9A6 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.81■□□□□ 0.44
LRRC40Q9H9A6 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
LRRC40Q9H9A6 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
LRRC40Q9H9A6 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
LRRC40Q9H9A6 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LRRC40Q9H9A6 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC17.8■□□□□ 0.44
LRRC40Q9H9A6 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC17.8■□□□□ 0.44
LRRC40Q9H9A6 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LRRC40Q9H9A6 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LRRC40Q9H9A6 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LRRC40Q9H9A6 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LRRC40Q9H9A6 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC17.8■□□□□ 0.44
LRRC40Q9H9A6 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LRRC40Q9H9A6 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
LRRC40Q9H9A6 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LRRC40Q9H9A6 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LRRC40Q9H9A6 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
LRRC40Q9H9A6 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC17.8■□□□□ 0.44
LRRC40Q9H9A6 TSSC2-201ENST00000450217 709 ntBASIC17.8■□□□□ 0.44
LRRC40Q9H9A6 MEG3-211ENST00000452514 461 ntTSL 3 BASIC17.8■□□□□ 0.44
LRRC40Q9H9A6 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC17.8■□□□□ 0.44
LRRC40Q9H9A6 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC17.8■□□□□ 0.44
LRRC40Q9H9A6 AC019129.2-201ENST00000609837 1235 ntBASIC17.8■□□□□ 0.44
LRRC40Q9H9A6 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC17.8■□□□□ 0.44
LRRC40Q9H9A6 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC17.8■□□□□ 0.44
LRRC40Q9H9A6 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LRRC40Q9H9A6 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LRRC40Q9H9A6 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC17.8■□□□□ 0.44
LRRC40Q9H9A6 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.8■□□□□ 0.44
LRRC40Q9H9A6 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LRRC40Q9H9A6 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LRRC40Q9H9A6 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LRRC40Q9H9A6 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LRRC40Q9H9A6 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LRRC40Q9H9A6 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC17.8■□□□□ 0.44
LRRC40Q9H9A6 IER3-202ENST00000376377 1350 ntBASIC17.79■□□□□ 0.44
LRRC40Q9H9A6 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
LRRC40Q9H9A6 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC17.79■□□□□ 0.44
LRRC40Q9H9A6 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
LRRC40Q9H9A6 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LRRC40Q9H9A6 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LRRC40Q9H9A6 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LRRC40Q9H9A6 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC17.79■□□□□ 0.44
LRRC40Q9H9A6 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LRRC40Q9H9A6 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LRRC40Q9H9A6 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.79■□□□□ 0.44
LRRC40Q9H9A6 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.79■□□□□ 0.44
LRRC40Q9H9A6 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
LRRC40Q9H9A6 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LRRC40Q9H9A6 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
LRRC40Q9H9A6 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
LRRC40Q9H9A6 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
LRRC40Q9H9A6 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
LRRC40Q9H9A6 AC103564.2-201ENST00000432853 1299 ntBASIC17.79■□□□□ 0.44
LRRC40Q9H9A6 DANCR-204ENST00000444958 709 ntTSL 3 BASIC17.79■□□□□ 0.44
LRRC40Q9H9A6 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC17.79■□□□□ 0.44
LRRC40Q9H9A6 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC17.79■□□□□ 0.44
LRRC40Q9H9A6 ABR-204ENST00000543210 1049 ntTSL 2 BASIC17.79■□□□□ 0.44
LRRC40Q9H9A6 AC009533.2-201ENST00000543664 586 ntBASIC17.79■□□□□ 0.44
LRRC40Q9H9A6 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC17.79■□□□□ 0.44
LRRC40Q9H9A6 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC17.79■□□□□ 0.44
LRRC40Q9H9A6 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC17.79■□□□□ 0.44
LRRC40Q9H9A6 ABR-217ENST00000572441 563 ntTSL 4 BASIC17.79■□□□□ 0.44
LRRC40Q9H9A6 AC109462.3-201ENST00000573934 613 ntBASIC17.79■□□□□ 0.44
LRRC40Q9H9A6 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
LRRC40Q9H9A6 TK1-204ENST00000590430 683 ntTSL 3 BASIC17.79■□□□□ 0.44
LRRC40Q9H9A6 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
LRRC40Q9H9A6 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC17.79■□□□□ 0.44
LRRC40Q9H9A6 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC17.79■□□□□ 0.44
LRRC40Q9H9A6 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.79■□□□□ 0.44
LRRC40Q9H9A6 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
LRRC40Q9H9A6 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
LRRC40Q9H9A6 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.79■□□□□ 0.44
LRRC40Q9H9A6 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC17.79■□□□□ 0.44
LRRC40Q9H9A6 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LRRC40Q9H9A6 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC17.79■□□□□ 0.44
LRRC40Q9H9A6 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC17.78■□□□□ 0.44
LRRC40Q9H9A6 KRT18P1-202ENST00000452408 1331 ntBASIC17.78■□□□□ 0.44
LRRC40Q9H9A6 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC17.78■□□□□ 0.44
LRRC40Q9H9A6 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LRRC40Q9H9A6 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LRRC40Q9H9A6 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
LRRC40Q9H9A6 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC17.78■□□□□ 0.44
LRRC40Q9H9A6 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LRRC40Q9H9A6 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LRRC40Q9H9A6 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC17.78■□□□□ 0.44
LRRC40Q9H9A6 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
LRRC40Q9H9A6 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LRRC40Q9H9A6 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LRRC40Q9H9A6 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
LRRC40Q9H9A6 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
LRRC40Q9H9A6 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LRRC40Q9H9A6 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms