Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
AP4E1Q9UPM8 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
AP4E1Q9UPM8 MYCLP1-201ENST00000372451 1075 ntBASIC18.22■□□□□ 0.51
AP4E1Q9UPM8 RCN1P2-201ENST00000398357 915 ntBASIC18.22■□□□□ 0.51
AP4E1Q9UPM8 PNN-202ENST00000553331 656 ntTSL 3 BASIC18.22■□□□□ 0.51
AP4E1Q9UPM8 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC18.22■□□□□ 0.51
AP4E1Q9UPM8 AC114341.1-201ENST00000618070 349 ntBASIC18.22■□□□□ 0.51
AP4E1Q9UPM8 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
AP4E1Q9UPM8 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
AP4E1Q9UPM8 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
AP4E1Q9UPM8 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
AP4E1Q9UPM8 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
AP4E1Q9UPM8 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC18.22■□□□□ 0.51
AP4E1Q9UPM8 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
AP4E1Q9UPM8 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
AP4E1Q9UPM8 KRT8P10-201ENST00000450021 1447 ntBASIC18.22■□□□□ 0.51
AP4E1Q9UPM8 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
AP4E1Q9UPM8 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
AP4E1Q9UPM8 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
AP4E1Q9UPM8 BANP-227ENST00000626016 2144 ntTSL 2 BASIC18.22■□□□□ 0.51
AP4E1Q9UPM8 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.22■□□□□ 0.51
AP4E1Q9UPM8 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
AP4E1Q9UPM8 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
AP4E1Q9UPM8 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
AP4E1Q9UPM8 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
AP4E1Q9UPM8 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC18.21■□□□□ 0.51
AP4E1Q9UPM8 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
AP4E1Q9UPM8 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
AP4E1Q9UPM8 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC18.21■□□□□ 0.51
AP4E1Q9UPM8 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
AP4E1Q9UPM8 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
AP4E1Q9UPM8 AL023806.1-201ENST00000603994 1649 ntBASIC18.21■□□□□ 0.51
AP4E1Q9UPM8 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
AP4E1Q9UPM8 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
AP4E1Q9UPM8 CD9-202ENST00000382515 1229 ntTSL 5 BASIC18.21■□□□□ 0.51
AP4E1Q9UPM8 CTNS-203ENST00000399306 803 ntTSL 3 BASIC18.21■□□□□ 0.51
AP4E1Q9UPM8 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC18.21■□□□□ 0.51
AP4E1Q9UPM8 HCG4P8-203ENST00000443049 980 ntBASIC18.21■□□□□ 0.51
AP4E1Q9UPM8 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC18.21■□□□□ 0.51
AP4E1Q9UPM8 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC18.21■□□□□ 0.51
AP4E1Q9UPM8 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
AP4E1Q9UPM8 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC18.21■□□□□ 0.51
AP4E1Q9UPM8 AC111152.3-201ENST00000569699 673 ntBASIC18.21■□□□□ 0.51
AP4E1Q9UPM8 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC18.21■□□□□ 0.51
AP4E1Q9UPM8 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC18.21■□□□□ 0.51
AP4E1Q9UPM8 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
AP4E1Q9UPM8 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
AP4E1Q9UPM8 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC18.21■□□□□ 0.51
AP4E1Q9UPM8 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC18.21■□□□□ 0.51
AP4E1Q9UPM8 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
AP4E1Q9UPM8 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
AP4E1Q9UPM8 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
AP4E1Q9UPM8 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
AP4E1Q9UPM8 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.5
AP4E1Q9UPM8 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
AP4E1Q9UPM8 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
AP4E1Q9UPM8 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
AP4E1Q9UPM8 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
AP4E1Q9UPM8 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
AP4E1Q9UPM8 AC108860.2-201ENST00000562760 2183 ntBASIC18.2■□□□□ 0.5
AP4E1Q9UPM8 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
AP4E1Q9UPM8 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC18.2■□□□□ 0.5
AP4E1Q9UPM8 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
AP4E1Q9UPM8 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
AP4E1Q9UPM8 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC18.2■□□□□ 0.5
AP4E1Q9UPM8 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
AP4E1Q9UPM8 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
AP4E1Q9UPM8 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
AP4E1Q9UPM8 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
AP4E1Q9UPM8 NUS1P2-201ENST00000417358 873 ntBASIC18.2■□□□□ 0.5
AP4E1Q9UPM8 POM121L3P-201ENST00000419331 1163 ntBASIC18.2■□□□□ 0.5
AP4E1Q9UPM8 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
AP4E1Q9UPM8 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC18.2■□□□□ 0.5
AP4E1Q9UPM8 TK1-204ENST00000590430 683 ntTSL 3 BASIC18.2■□□□□ 0.5
AP4E1Q9UPM8 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
AP4E1Q9UPM8 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
AP4E1Q9UPM8 CCNC-219ENST00000627680 896 ntTSL 5 BASIC18.2■□□□□ 0.5
AP4E1Q9UPM8 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
AP4E1Q9UPM8 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
AP4E1Q9UPM8 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
AP4E1Q9UPM8 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC18.2■□□□□ 0.5
AP4E1Q9UPM8 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC18.2■□□□□ 0.5
AP4E1Q9UPM8 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
AP4E1Q9UPM8 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
AP4E1Q9UPM8 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
AP4E1Q9UPM8 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC18.2■□□□□ 0.5
AP4E1Q9UPM8 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
AP4E1Q9UPM8 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
AP4E1Q9UPM8 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
AP4E1Q9UPM8 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC18.2■□□□□ 0.5
AP4E1Q9UPM8 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
AP4E1Q9UPM8 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
AP4E1Q9UPM8 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
AP4E1Q9UPM8 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
AP4E1Q9UPM8 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC18.19■□□□□ 0.5
AP4E1Q9UPM8 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
AP4E1Q9UPM8 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
AP4E1Q9UPM8 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
AP4E1Q9UPM8 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
AP4E1Q9UPM8 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms