Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC16.79■□□□□ 0.28
MSX2P35548 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC16.79■□□□□ 0.28
MSX2P35548 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
MSX2P35548 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
MSX2P35548 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MSX2P35548 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC16.79■□□□□ 0.28
MSX2P35548 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC16.79■□□□□ 0.28
MSX2P35548 AC116562.2-201ENST00000507042 360 ntBASIC16.79■□□□□ 0.28
MSX2P35548 RPPH1-201ENST00000516869 333 ntBASIC16.79■□□□□ 0.28
MSX2P35548 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC16.79■□□□□ 0.28
MSX2P35548 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC16.79■□□□□ 0.28
MSX2P35548 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
MSX2P35548 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC16.79■□□□□ 0.28
MSX2P35548 DGCR10-201ENST00000609839 495 ntBASIC16.79■□□□□ 0.28
MSX2P35548 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC16.79■□□□□ 0.28
MSX2P35548 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
MSX2P35548 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
MSX2P35548 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MSX2P35548 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MSX2P35548 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MSX2P35548 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MSX2P35548 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MSX2P35548 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MSX2P35548 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
MSX2P35548 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
MSX2P35548 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC16.79■□□□□ 0.28
MSX2P35548 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
MSX2P35548 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
MSX2P35548 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MSX2P35548 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.79■□□□□ 0.28
MSX2P35548 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC16.79■□□□□ 0.28
MSX2P35548 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MSX2P35548 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
MSX2P35548 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
MSX2P35548 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC16.79■□□□□ 0.28
MSX2P35548 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
MSX2P35548 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
MSX2P35548 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSX2P35548 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSX2P35548 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSX2P35548 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSX2P35548 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC16.78■□□□□ 0.28
MSX2P35548 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSX2P35548 AC092053.1-201ENST00000605787 1936 ntBASIC16.78■□□□□ 0.28
MSX2P35548 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSX2P35548 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSX2P35548 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSX2P35548 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.78■□□□□ 0.28
MSX2P35548 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSX2P35548 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSX2P35548 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
MSX2P35548 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSX2P35548 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
MSX2P35548 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSX2P35548 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSX2P35548 ILF2-202ENST00000368681 726 ntTSL 2 BASIC16.78■□□□□ 0.28
MSX2P35548 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSX2P35548 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
MSX2P35548 HLA-L-209ENST00000420110 1011 ntBASIC16.78■□□□□ 0.28
MSX2P35548 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC16.78■□□□□ 0.28
MSX2P35548 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC16.78■□□□□ 0.28
MSX2P35548 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC16.78■□□□□ 0.28
MSX2P35548 AC128676.1-201ENST00000454392 318 ntBASIC16.78■□□□□ 0.28
MSX2P35548 ADM-205ENST00000528544 586 ntTSL 2 BASIC16.78■□□□□ 0.28
MSX2P35548 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC16.78■□□□□ 0.28
MSX2P35548 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC16.78■□□□□ 0.28
MSX2P35548 AC010240.3-201ENST00000607688 395 ntBASIC16.78■□□□□ 0.28
MSX2P35548 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSX2P35548 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC16.78■□□□□ 0.28
MSX2P35548 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSX2P35548 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSX2P35548 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
MSX2P35548 PAUPAR-201ENST00000630360 2965 ntBASIC16.78■□□□□ 0.28
MSX2P35548 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSX2P35548 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSX2P35548 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC16.78■□□□□ 0.28
MSX2P35548 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSX2P35548 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
MSX2P35548 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
MSX2P35548 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
MSX2P35548 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
MSX2P35548 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
MSX2P35548 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
MSX2P35548 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC16.77■□□□□ 0.28
MSX2P35548 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.77■□□□□ 0.28
MSX2P35548 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
MSX2P35548 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC16.77■□□□□ 0.28
MSX2P35548 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
MSX2P35548 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
MSX2P35548 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC16.77■□□□□ 0.28
MSX2P35548 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
MSX2P35548 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.28
MSX2P35548 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC16.77■□□□□ 0.28
MSX2P35548 FER1L4-210ENST00000615531 5998 ntBASIC16.77■□□□□ 0.28
MSX2P35548 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
MSX2P35548 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
MSX2P35548 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC16.77■□□□□ 0.28
MSX2P35548 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC16.77■□□□□ 0.28
MSX2P35548 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC16.77■□□□□ 0.28
MSX2P35548 WWOX-216ENST00000569818 525 ntBASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms