Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHMT2P34897 FAM220CP-201ENST00000395253 831 ntBASIC17.22■□□□□ 0.35
SHMT2P34897 AC007967.3-201ENST00000434308 558 ntBASIC17.22■□□□□ 0.35
SHMT2P34897 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHMT2P34897 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC17.22■□□□□ 0.35
SHMT2P34897 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC17.22■□□□□ 0.35
SHMT2P34897 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC17.22■□□□□ 0.35
SHMT2P34897 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
SHMT2P34897 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHMT2P34897 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC17.22■□□□□ 0.35
SHMT2P34897 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
SHMT2P34897 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC17.22■□□□□ 0.35
SHMT2P34897 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.22■□□□□ 0.35
SHMT2P34897 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SHMT2P34897 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC17.22■□□□□ 0.35
SHMT2P34897 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SHMT2P34897 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SHMT2P34897 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHMT2P34897 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC17.21■□□□□ 0.35
SHMT2P34897 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC17.21■□□□□ 0.35
SHMT2P34897 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC17.21■□□□□ 0.35
SHMT2P34897 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
SHMT2P34897 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SHMT2P34897 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC17.21■□□□□ 0.35
SHMT2P34897 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SHMT2P34897 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SHMT2P34897 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SHMT2P34897 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SHMT2P34897 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SHMT2P34897 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SHMT2P34897 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SHMT2P34897 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SHMT2P34897 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
SHMT2P34897 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SHMT2P34897 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC17.21■□□□□ 0.35
SHMT2P34897 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SHMT2P34897 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC17.21■□□□□ 0.35
SHMT2P34897 RCN1P2-201ENST00000398357 915 ntBASIC17.21■□□□□ 0.35
SHMT2P34897 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC17.21■□□□□ 0.35
SHMT2P34897 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC17.21■□□□□ 0.35
SHMT2P34897 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SHMT2P34897 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC17.21■□□□□ 0.35
SHMT2P34897 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC17.21■□□□□ 0.35
SHMT2P34897 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SHMT2P34897 MIR5100-201ENST00000579544 119 ntBASIC17.21■□□□□ 0.35
SHMT2P34897 TBCB-205ENST00000585746 875 ntTSL 3 BASIC17.21■□□□□ 0.35
SHMT2P34897 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC17.21■□□□□ 0.35
SHMT2P34897 AL591684.3-201ENST00000605187 298 ntBASIC17.21■□□□□ 0.35
SHMT2P34897 AL732292.2-201ENST00000609649 430 ntBASIC17.21■□□□□ 0.35
SHMT2P34897 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
SHMT2P34897 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SHMT2P34897 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SHMT2P34897 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SHMT2P34897 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
SHMT2P34897 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.21■□□□□ 0.35
SHMT2P34897 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
SHMT2P34897 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC17.21■□□□□ 0.35
SHMT2P34897 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
SHMT2P34897 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SHMT2P34897 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
SHMT2P34897 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
SHMT2P34897 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
SHMT2P34897 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
SHMT2P34897 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SHMT2P34897 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SHMT2P34897 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.2■□□□□ 0.34
SHMT2P34897 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
SHMT2P34897 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SHMT2P34897 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SHMT2P34897 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SHMT2P34897 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SHMT2P34897 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SHMT2P34897 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC17.2■□□□□ 0.34
SHMT2P34897 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC17.2■□□□□ 0.34
SHMT2P34897 PP7080-204ENST00000510714 601 ntTSL 3 BASIC17.2■□□□□ 0.34
SHMT2P34897 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC17.2■□□□□ 0.34
SHMT2P34897 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SHMT2P34897 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC17.2■□□□□ 0.34
SHMT2P34897 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SHMT2P34897 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
SHMT2P34897 IGHV3OR16-7-201ENST00000604106 360 ntBASIC17.2■□□□□ 0.34
SHMT2P34897 IFNL4P1-201ENST00000607083 540 ntBASIC17.2■□□□□ 0.34
SHMT2P34897 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC17.2■□□□□ 0.34
SHMT2P34897 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC17.2■□□□□ 0.34
SHMT2P34897 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SHMT2P34897 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SHMT2P34897 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SHMT2P34897 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SHMT2P34897 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SHMT2P34897 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SHMT2P34897 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SHMT2P34897 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SHMT2P34897 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC17.2■□□□□ 0.34
SHMT2P34897 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
SHMT2P34897 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SHMT2P34897 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SHMT2P34897 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC17.2■□□□□ 0.34
SHMT2P34897 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SHMT2P34897 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SHMT2P34897 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms