Protein–RNA interactions for Protein: Q8NB14

USP38, Ubiquitin carboxyl-terminal hydrolase 38, humanhuman

Predictions only

Length 1,042 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP38Q8NB14 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
USP38Q8NB14 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC19.63■□□□□ 0.73
USP38Q8NB14 AC211486.1-202ENST00000416371 468 ntBASIC19.63■□□□□ 0.73
USP38Q8NB14 AP006288.1-201ENST00000446065 395 ntBASIC19.63■□□□□ 0.73
USP38Q8NB14 AC211476.1-201ENST00000503899 468 ntBASIC19.63■□□□□ 0.73
USP38Q8NB14 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC19.63■□□□□ 0.73
USP38Q8NB14 AL139288.1-201ENST00000623748 933 ntBASIC19.63■□□□□ 0.73
USP38Q8NB14 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP38Q8NB14 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP38Q8NB14 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
USP38Q8NB14 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
USP38Q8NB14 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
USP38Q8NB14 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
USP38Q8NB14 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP38Q8NB14 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC19.62■□□□□ 0.73
USP38Q8NB14 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP38Q8NB14 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP38Q8NB14 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP38Q8NB14 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP38Q8NB14 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP38Q8NB14 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP38Q8NB14 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
USP38Q8NB14 AC004832.2-201ENST00000426397 482 ntBASIC19.62■□□□□ 0.73
USP38Q8NB14 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC19.62■□□□□ 0.73
USP38Q8NB14 COX20P2-201ENST00000452636 358 ntBASIC19.62■□□□□ 0.73
USP38Q8NB14 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC19.62■□□□□ 0.73
USP38Q8NB14 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC19.62■□□□□ 0.73
USP38Q8NB14 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC19.62■□□□□ 0.73
USP38Q8NB14 AC021087.4-201ENST00000563761 564 ntBASIC19.62■□□□□ 0.73
USP38Q8NB14 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC19.62■□□□□ 0.73
USP38Q8NB14 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC19.62■□□□□ 0.73
USP38Q8NB14 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC19.62■□□□□ 0.73
USP38Q8NB14 Z83851.2-201ENST00000609564 659 ntBASIC19.62■□□□□ 0.73
USP38Q8NB14 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP38Q8NB14 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC19.62■□□□□ 0.73
USP38Q8NB14 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
USP38Q8NB14 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP38Q8NB14 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
USP38Q8NB14 FZD10-202ENST00000539839 3282 ntBASIC19.62■□□□□ 0.73
USP38Q8NB14 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP38Q8NB14 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP38Q8NB14 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP38Q8NB14 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
USP38Q8NB14 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC19.62■□□□□ 0.73
USP38Q8NB14 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP38Q8NB14 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP38Q8NB14 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
USP38Q8NB14 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
USP38Q8NB14 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
USP38Q8NB14 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC19.61■□□□□ 0.73
USP38Q8NB14 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP38Q8NB14 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC19.61■□□□□ 0.73
USP38Q8NB14 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC19.61■□□□□ 0.73
USP38Q8NB14 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP38Q8NB14 AC092910.1-201ENST00000482027 1129 ntBASIC19.61■□□□□ 0.73
USP38Q8NB14 RNA5SP415-201ENST00000517246 115 ntBASIC19.61■□□□□ 0.73
USP38Q8NB14 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
USP38Q8NB14 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
USP38Q8NB14 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
USP38Q8NB14 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC19.61■□□□□ 0.73
USP38Q8NB14 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
USP38Q8NB14 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
USP38Q8NB14 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP38Q8NB14 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP38Q8NB14 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP38Q8NB14 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
USP38Q8NB14 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC19.61■□□□□ 0.73
USP38Q8NB14 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC19.61■□□□□ 0.73
USP38Q8NB14 TBC1D3P5-201ENST00000579401 1545 ntBASIC19.61■□□□□ 0.73
USP38Q8NB14 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC19.6■□□□□ 0.73
USP38Q8NB14 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
USP38Q8NB14 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP38Q8NB14 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC19.6■□□□□ 0.73
USP38Q8NB14 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC19.6■□□□□ 0.73
USP38Q8NB14 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP38Q8NB14 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC19.6■□□□□ 0.73
USP38Q8NB14 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP38Q8NB14 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP38Q8NB14 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC19.6■□□□□ 0.73
USP38Q8NB14 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
USP38Q8NB14 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP38Q8NB14 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP38Q8NB14 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC19.6■□□□□ 0.73
USP38Q8NB14 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC19.6■□□□□ 0.73
USP38Q8NB14 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC19.6■□□□□ 0.73
USP38Q8NB14 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC19.6■□□□□ 0.73
USP38Q8NB14 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP38Q8NB14 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP38Q8NB14 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP38Q8NB14 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC19.6■□□□□ 0.73
USP38Q8NB14 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC19.59■□□□□ 0.73
USP38Q8NB14 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC19.59■□□□□ 0.73
USP38Q8NB14 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC19.59■□□□□ 0.73
USP38Q8NB14 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC19.59■□□□□ 0.73
USP38Q8NB14 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
USP38Q8NB14 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP38Q8NB14 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC19.59■□□□□ 0.73
USP38Q8NB14 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP38Q8NB14 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP38Q8NB14 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms