Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
SSU72Q9NP77 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
SSU72Q9NP77 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SSU72Q9NP77 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SSU72Q9NP77 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.47■□□□□ 0.39
SSU72Q9NP77 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.47■□□□□ 0.39
SSU72Q9NP77 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.47■□□□□ 0.39
SSU72Q9NP77 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SSU72Q9NP77 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SSU72Q9NP77 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC17.47■□□□□ 0.39
SSU72Q9NP77 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.47■□□□□ 0.39
SSU72Q9NP77 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SSU72Q9NP77 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SSU72Q9NP77 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
SSU72Q9NP77 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
SSU72Q9NP77 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
SSU72Q9NP77 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC17.47■□□□□ 0.39
SSU72Q9NP77 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC17.47■□□□□ 0.39
SSU72Q9NP77 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC17.47■□□□□ 0.39
SSU72Q9NP77 MIR4651-201ENST00000582622 73 ntBASIC17.47■□□□□ 0.39
SSU72Q9NP77 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SSU72Q9NP77 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC17.47■□□□□ 0.39
SSU72Q9NP77 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SSU72Q9NP77 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.47■□□□□ 0.39
SSU72Q9NP77 AL157888.1-201ENST00000631930 593 ntBASIC17.47■□□□□ 0.39
SSU72Q9NP77 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SSU72Q9NP77 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SSU72Q9NP77 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SSU72Q9NP77 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SSU72Q9NP77 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.47■□□□□ 0.39
SSU72Q9NP77 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SSU72Q9NP77 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SSU72Q9NP77 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC17.47■□□□□ 0.39
SSU72Q9NP77 AMT-250ENST00000637682 1823 ntTSL 5 BASIC17.47■□□□□ 0.39
SSU72Q9NP77 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SSU72Q9NP77 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC17.47■□□□□ 0.39
SSU72Q9NP77 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SSU72Q9NP77 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SSU72Q9NP77 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
SSU72Q9NP77 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC17.47■□□□□ 0.39
SSU72Q9NP77 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SSU72Q9NP77 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC17.46■□□□□ 0.39
SSU72Q9NP77 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
SSU72Q9NP77 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SSU72Q9NP77 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC17.46■□□□□ 0.39
SSU72Q9NP77 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC17.46■□□□□ 0.39
SSU72Q9NP77 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SSU72Q9NP77 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SSU72Q9NP77 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SSU72Q9NP77 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SSU72Q9NP77 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SSU72Q9NP77 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC17.46■□□□□ 0.39
SSU72Q9NP77 AL512604.3-201ENST00000569583 964 ntBASIC17.46■□□□□ 0.39
SSU72Q9NP77 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SSU72Q9NP77 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SSU72Q9NP77 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
SSU72Q9NP77 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC17.46■□□□□ 0.39
SSU72Q9NP77 BANP-204ENST00000393208 2283 ntTSL 2 BASIC17.46■□□□□ 0.39
SSU72Q9NP77 GCK-209ENST00000616242 2260 ntTSL 5 BASIC17.46■□□□□ 0.39
SSU72Q9NP77 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SSU72Q9NP77 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
SSU72Q9NP77 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SSU72Q9NP77 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.38
SSU72Q9NP77 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.46■□□□□ 0.38
SSU72Q9NP77 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
SSU72Q9NP77 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC17.45■□□□□ 0.38
SSU72Q9NP77 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC17.45■□□□□ 0.38
SSU72Q9NP77 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SSU72Q9NP77 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SSU72Q9NP77 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SSU72Q9NP77 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC17.45■□□□□ 0.38
SSU72Q9NP77 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SSU72Q9NP77 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.45■□□□□ 0.38
SSU72Q9NP77 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SSU72Q9NP77 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SSU72Q9NP77 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SSU72Q9NP77 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SSU72Q9NP77 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC17.45■□□□□ 0.38
SSU72Q9NP77 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SSU72Q9NP77 RNF216P1-203ENST00000404404 2427 ntBASIC17.45■□□□□ 0.38
SSU72Q9NP77 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SSU72Q9NP77 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SSU72Q9NP77 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.45■□□□□ 0.38
SSU72Q9NP77 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SSU72Q9NP77 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SSU72Q9NP77 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
SSU72Q9NP77 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SSU72Q9NP77 REXO2-216ENST00000544196 452 ntTSL 3 BASIC17.45■□□□□ 0.38
SSU72Q9NP77 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SSU72Q9NP77 AC092666.2-201ENST00000613287 246 ntBASIC17.45■□□□□ 0.38
SSU72Q9NP77 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SSU72Q9NP77 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC17.45■□□□□ 0.38
SSU72Q9NP77 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC17.45■□□□□ 0.38
SSU72Q9NP77 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
SSU72Q9NP77 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
SSU72Q9NP77 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC17.45■□□□□ 0.38
SSU72Q9NP77 AL391005.1-201ENST00000623953 2435 ntBASIC17.45■□□□□ 0.38
SSU72Q9NP77 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SSU72Q9NP77 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SSU72Q9NP77 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms