Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 FES-204ENST00000414248 2327 ntTSL 2 BASIC13.69□□□□□ -0.22
CXCL1P09341 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC13.69□□□□□ -0.22
CXCL1P09341 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CXCL1P09341 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC13.69□□□□□ -0.22
CXCL1P09341 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CXCL1P09341 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC13.69□□□□□ -0.22
CXCL1P09341 AL365203.3-201ENST00000609742 2057 ntBASIC13.69□□□□□ -0.22
CXCL1P09341 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CXCL1P09341 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC13.69□□□□□ -0.22
CXCL1P09341 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CXCL1P09341 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC13.69□□□□□ -0.22
CXCL1P09341 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CXCL1P09341 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC13.69□□□□□ -0.22
CXCL1P09341 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CXCL1P09341 KLF2-202ENST00000592003 564 ntTSL 3 BASIC13.69□□□□□ -0.22
CXCL1P09341 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC13.69□□□□□ -0.22
CXCL1P09341 MIR5787-201ENST00000611784 55 ntBASIC13.69□□□□□ -0.22
CXCL1P09341 ANKRD20A6P-201ENST00000618763 204 ntBASIC13.69□□□□□ -0.22
CXCL1P09341 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CXCL1P09341 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CXCL1P09341 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC13.69□□□□□ -0.22
CXCL1P09341 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CXCL1P09341 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
CXCL1P09341 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CXCL1P09341 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC13.69□□□□□ -0.22
CXCL1P09341 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CXCL1P09341 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CXCL1P09341 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CXCL1P09341 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CXCL1P09341 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CXCL1P09341 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC13.69□□□□□ -0.22
CXCL1P09341 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CXCL1P09341 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC13.69□□□□□ -0.22
CXCL1P09341 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC13.69□□□□□ -0.22
CXCL1P09341 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
CXCL1P09341 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
CXCL1P09341 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CXCL1P09341 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC13.69□□□□□ -0.22
CXCL1P09341 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC13.69□□□□□ -0.22
CXCL1P09341 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CXCL1P09341 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
CXCL1P09341 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CXCL1P09341 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CXCL1P09341 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CXCL1P09341 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CXCL1P09341 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
CXCL1P09341 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CXCL1P09341 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC13.68□□□□□ -0.22
CXCL1P09341 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
CXCL1P09341 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CXCL1P09341 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CXCL1P09341 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
CXCL1P09341 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CXCL1P09341 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CXCL1P09341 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC13.68□□□□□ -0.22
CXCL1P09341 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
CXCL1P09341 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC13.68□□□□□ -0.22
CXCL1P09341 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
CXCL1P09341 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CXCL1P09341 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
CXCL1P09341 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
CXCL1P09341 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC13.68□□□□□ -0.22
CXCL1P09341 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CXCL1P09341 AC083906.2-201ENST00000511578 360 ntBASIC13.68□□□□□ -0.22
CXCL1P09341 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC13.68□□□□□ -0.22
CXCL1P09341 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC13.68□□□□□ -0.22
CXCL1P09341 VPS53-216ENST00000574029 585 ntTSL 4 BASIC13.68□□□□□ -0.22
CXCL1P09341 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC13.68□□□□□ -0.22
CXCL1P09341 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
CXCL1P09341 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CXCL1P09341 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CXCL1P09341 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CXCL1P09341 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
CXCL1P09341 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CXCL1P09341 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CXCL1P09341 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
CXCL1P09341 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CXCL1P09341 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CXCL1P09341 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CXCL1P09341 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CXCL1P09341 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC13.67□□□□□ -0.22
CXCL1P09341 NBPF21P-201ENST00000425093 1451 ntBASIC13.67□□□□□ -0.22
CXCL1P09341 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
CXCL1P09341 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CXCL1P09341 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CXCL1P09341 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC13.67□□□□□ -0.22
CXCL1P09341 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
CXCL1P09341 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CXCL1P09341 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CXCL1P09341 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
CXCL1P09341 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
CXCL1P09341 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC13.67□□□□□ -0.22
CXCL1P09341 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CXCL1P09341 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC13.67□□□□□ -0.22
CXCL1P09341 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CXCL1P09341 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CXCL1P09341 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
CXCL1P09341 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CXCL1P09341 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CXCL1P09341 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC13.67□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms