Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.712e-7■□□□□ 9.2
DDX55Q8NHQ9 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.712e-7■□□□□ 9.2
DDX55Q8NHQ9 STXBP2-215ENST00000599558 385 ntTSL 219.43■□□□□ 0.77e-6■□□□□ 9.2
DDX55Q8NHQ9 NUTF2-204ENST00000568390 593 ntTSL 319.34■□□□□ 0.697e-6■□□□□ 9.2
DDX55Q8NHQ9 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.632e-7■□□□□ 9.2
DDX55Q8NHQ9 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.621e-8■□□□□ 9.2
DDX55Q8NHQ9 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.623e-11■□□□□ 9.2
DDX55Q8NHQ9 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.591e-12■□□□□ 9.2
DDX55Q8NHQ9 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC18.73■□□□□ 0.591e-8■□□□□ 9.2
DDX55Q8NHQ9 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.575e-10■□□□□ 9.2
DDX55Q8NHQ9 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.575e-19■□□□□ 9.2
DDX55Q8NHQ9 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.553e-10■□□□□ 9.2
DDX55Q8NHQ9 TNNT1-214ENST00000589745 529 ntTSL 218.47■□□□□ 0.551e-12■□□□□ 9.2
DDX55Q8NHQ9 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.551e-12■□□□□ 9.2
DDX55Q8NHQ9 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC18.46■□□□□ 0.553e-11■□□□□ 9.2
DDX55Q8NHQ9 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.542e-7■□□□□ 9.2
DDX55Q8NHQ9 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC18.33■□□□□ 0.525e-19■□□□□ 9.2
DDX55Q8NHQ9 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.491e-12■□□□□ 9.2
DDX55Q8NHQ9 PIK3R2-202ENST00000426902 3273 ntTSL 218.01■□□□□ 0.471e-8■□□□□ 9.2
DDX55Q8NHQ9 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC17.82■□□□□ 0.442e-16■□□□□ 9.2
DDX55Q8NHQ9 TROAP-203ENST00000546735 1213 ntTSL 1 (best)17.82■□□□□ 0.443e-11■□□□□ 9.2
DDX55Q8NHQ9 SERTAD3-205ENST00000601217 398 ntTSL 317.75■□□□□ 0.437e-6■□□□□ 9.2
DDX55Q8NHQ9 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.427e-6■□□□□ 9.2
DDX55Q8NHQ9 RAB28-205ENST00000508274 1551 ntTSL 1 (best)17.67■□□□□ 0.422e-7■□□□□ 9.2
DDX55Q8NHQ9 NUTF2-202ENST00000567105 582 ntTSL 317.57■□□□□ 0.47e-6■□□□□ 9.2
DDX55Q8NHQ9 KDM2B-216ENST00000543025 2522 ntTSL 1 (best)17.51■□□□□ 0.397e-6■□□□□ 9.2
DDX55Q8NHQ9 SNHG17-207ENST00000449469 2138 ntTSL 217.5■□□□□ 0.397e-6■□□□□ 9.2
DDX55Q8NHQ9 GOLGA2-202ENST00000450617 1439 ntTSL 517.43■□□□□ 0.382e-7■□□□□ 9.2
DDX55Q8NHQ9 RHEB-207ENST00000496004 744 ntTSL 2 BASIC17.19■□□□□ 0.341e-8■□□□□ 9.2
DDX55Q8NHQ9 TROAP-211ENST00000549891 932 ntTSL 1 (best)17.04■□□□□ 0.323e-11■□□□□ 9.2
DDX55Q8NHQ9 AC024293.1-201ENST00000467930 498 ntBASIC16.96■□□□□ 0.315e-10■□□□□ 9.2
DDX55Q8NHQ9 TNNT1-216ENST00000593046 800 ntTSL 216.86■□□□□ 0.291e-12■□□□□ 9.2
DDX55Q8NHQ9 PAM16-213ENST00000575942 806 ntTSL 316.85■□□□□ 0.292e-7■□□□□ 9.2
DDX55Q8NHQ9 MPDU1-208ENST00000571877 1195 ntTSL 1 (best)16.84■□□□□ 0.291e-8■□□□□ 9.2
DDX55Q8NHQ9 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC16.76■□□□□ 0.273e-16■□□□□ 9.2
DDX55Q8NHQ9 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.267e-6■□□□□ 9.2
DDX55Q8NHQ9 C6orf136-211ENST00000487873 464 ntTSL 316.7■□□□□ 0.267e-6■□□□□ 9.2
DDX55Q8NHQ9 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC16.68■□□□□ 0.264e-15■□□□□ 9.2
DDX55Q8NHQ9 PPIH-205ENST00000440068 669 ntTSL 516.68■□□□□ 0.264e-15■□□□□ 9.2
DDX55Q8NHQ9 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.243e-11■□□□□ 9.2
DDX55Q8NHQ9 AL662899.3-203ENST00000409691 1903 ntTSL 316.57■□□□□ 0.245e-10■□□□□ 9.2
DDX55Q8NHQ9 GOLGA2-204ENST00000461031 475 ntTSL 316.57■□□□□ 0.242e-7■□□□□ 9.2
DDX55Q8NHQ9 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC16.46■□□□□ 0.235e-10■□□□□ 9.2
DDX55Q8NHQ9 TNNT1-202ENST00000356783 934 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.21e-12■□□□□ 9.2
DDX55Q8NHQ9 ERI3-204ENST00000456170 1103 ntTSL 516.13■□□□□ 0.171e-12■□□□□ 9.2
DDX55Q8NHQ9 BABAM1-203ENST00000448635 589 ntTSL 316.11■□□□□ 0.177e-6■□□□□ 9.2
DDX55Q8NHQ9 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.165e-10■□□□□ 9.2
DDX55Q8NHQ9 LRP5-206ENST00000529993 5103 ntTSL 1 (best)15.96■□□□□ 0.154e-9■□□□□ 9.2
DDX55Q8NHQ9 GOLGA2-207ENST00000470630 550 ntTSL 315.91■□□□□ 0.142e-7■□□□□ 9.2
DDX55Q8NHQ9 PCTP-206ENST00000573500 919 ntTSL 3 BASIC15.89■□□□□ 0.132e-7■□□□□ 9.2
DDX55Q8NHQ9 BABAM1-211ENST00000599057 634 ntAPPRIS ALT2 TSL 515.75■□□□□ 0.117e-6■□□□□ 9.2
DDX55Q8NHQ9 BABAM1-204ENST00000594247 1004 ntTSL 515.75■□□□□ 0.117e-6■□□□□ 9.2
DDX55Q8NHQ9 NUTF2-203ENST00000568233 589 ntTSL 215.75■□□□□ 0.117e-6■□□□□ 9.2
DDX55Q8NHQ9 MAP2K2-209ENST00000600584 2926 ntTSL 215.72■□□□□ 0.115e-10■□□□□ 9.2
DDX55Q8NHQ9 USF1-202ENST00000368020 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.077e-6■□□□□ 9.2
DDX55Q8NHQ9 TROAP-212ENST00000550346 640 ntAPPRIS ALT2 TSL 315.48■□□□□ 0.073e-11■□□□□ 9.2
DDX55Q8NHQ9 GSTK1-201ENST00000358406 1044 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.072e-16■□□□□ 9.2
DDX55Q8NHQ9 PCTP-202ENST00000325214 1856 ntTSL 1 (best) BASIC15.26■□□□□ 0.032e-7■□□□□ 9.2
DDX55Q8NHQ9 SNHG17-202ENST00000414142 2102 ntTSL 215.24■□□□□ 0.037e-6■□□□□ 9.2
DDX55Q8NHQ9 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC15.24■□□□□ 0.037e-6■□□□□ 9.2
DDX55Q8NHQ9 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC15.12■□□□□ 0.012e-7■□□□□ 9.2
DDX55Q8NHQ9 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC15.05■□□□□ 07e-6■□□□□ 9.2
DDX55Q8NHQ9 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -02e-7■□□□□ 9.2
DDX55Q8NHQ9 ATXN2L-209ENST00000562686 489 ntTSL 314.87□□□□□ -0.034e-38■□□□□ 9.2
DDX55Q8NHQ9 SERTAD3-202ENST00000392028 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.047e-6■□□□□ 9.2
DDX55Q8NHQ9 NLRP1-205ENST00000544378 5281 ntTSL 214.79□□□□□ -0.047e-6■□□□□ 9.2
DDX55Q8NHQ9 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC14.73□□□□□ -0.052e-8■□□□□ 9.2
DDX55Q8NHQ9 SMYD5-207ENST00000486518 566 ntTSL 214.61□□□□□ -0.077e-6■□□□□ 9.2
DDX55Q8NHQ9 AL162431.2-201ENST00000358073 2424 ntTSL 2 BASIC14.52□□□□□ -0.082e-7■□□□□ 9.2
DDX55Q8NHQ9 TROAP-202ENST00000380327 675 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.113e-11■□□□□ 9.2
DDX55Q8NHQ9 LRP5-205ENST00000529702 586 ntTSL 314.38□□□□□ -0.114e-9■□□□□ 9.2
DDX55Q8NHQ9 SCAMP4-207ENST00000472442 2973 ntTSL 214.31□□□□□ -0.125e-10■□□□□ 9.2
DDX55Q8NHQ9 SLTM-222ENST00000560494 674 ntTSL 314.3□□□□□ -0.122e-7■□□□□ 9.2
DDX55Q8NHQ9 LY6G5B-209ENST00000471088 677 ntTSL 514.22□□□□□ -0.135e-10■□□□□ 9.2
DDX55Q8NHQ9 MOB1B-204ENST00000509041 2056 ntTSL 214.19□□□□□ -0.147e-6■□□□□ 9.2
DDX55Q8NHQ9 KDM2B-209ENST00000538503 6676 ntTSL 514.1□□□□□ -0.157e-6■□□□□ 9.2
DDX55Q8NHQ9 AP1G2-204ENST00000465445 2554 ntTSL 514.05□□□□□ -0.162e-7■□□□□ 9.2
DDX55Q8NHQ9 GSTK1-205ENST00000443571 850 ntTSL 2 BASIC14□□□□□ -0.172e-16■□□□□ 9.2
DDX55Q8NHQ9 TROAP-209ENST00000549275 348 ntAPPRIS ALT2 TSL 3 BASIC13.98□□□□□ -0.173e-11■□□□□ 9.2
DDX55Q8NHQ9 TROAP-210ENST00000549534 839 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.173e-11■□□□□ 9.2
DDX55Q8NHQ9 GAB3-201ENST00000369568 3704 ntAPPRIS ALT2 TSL 213.97□□□□□ -0.171e-12■□□□□ 9.2
DDX55Q8NHQ9 AP1G2-205ENST00000535852 2471 ntTSL 1 (best)13.91□□□□□ -0.182e-7■□□□□ 9.2
DDX55Q8NHQ9 KDM2B-215ENST00000542973 3170 ntTSL 2 BASIC13.88□□□□□ -0.197e-6■□□□□ 9.2
DDX55Q8NHQ9 USF1-203ENST00000368021 1807 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.197e-6■□□□□ 9.2
DDX55Q8NHQ9 AMBRA1-212ENST00000534300 5067 ntTSL 1 (best) BASIC13.59□□□□□ -0.235e-10■□□□□ 9.2
DDX55Q8NHQ9 STX16-202ENST00000355957 4897 ntTSL 2 BASIC13.49□□□□□ -0.252e-8■□□□□ 9.2
DDX55Q8NHQ9 KDM2B-219ENST00000611216 3434 ntTSL 5 BASIC13.41□□□□□ -0.267e-6■□□□□ 9.2
DDX55Q8NHQ9 SLTM-203ENST00000432750 2383 ntTSL 513.37□□□□□ -0.272e-7■□□□□ 9.2
DDX55Q8NHQ9 MPDU1-207ENST00000571822 1020 ntTSL 213.27□□□□□ -0.291e-8■□□□□ 9.2
DDX55Q8NHQ9 AP1G2-203ENST00000460049 2672 ntTSL 1 (best)13.26□□□□□ -0.292e-7■□□□□ 9.2
DDX55Q8NHQ9 USF1-201ENST00000368019 998 ntTSL 5 BASIC13.25□□□□□ -0.297e-6■□□□□ 9.2
DDX55Q8NHQ9 LEPROT-201ENST00000371065 4622 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.293e-11■□□□□ 9.2
DDX55Q8NHQ9 TROAP-204ENST00000546776 1011 ntTSL 313.19□□□□□ -0.33e-11■□□□□ 9.2
DDX55Q8NHQ9 AC020915.2-201ENST00000591325 4227 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.32e-7■□□□□ 9.2
DDX55Q8NHQ9 NLRP1-202ENST00000269280 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.37e-6■□□□□ 9.2
DDX55Q8NHQ9 BABAM1-212ENST00000599474 731 ntAPPRIS ALT2 TSL 213.16□□□□□ -0.37e-6■□□□□ 9.2
DDX55Q8NHQ9 NLRP1-208ENST00000571451 5444 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.317e-6■□□□□ 9.2
DDX55Q8NHQ9 TROAP-214ENST00000551192 1469 ntTSL 213.13□□□□□ -0.313e-11■□□□□ 9.2
DDX55Q8NHQ9 IGFL2-AS1-205ENST00000599817 340 ntTSL 213.12□□□□□ -0.311e-8■□□□□ 9.2
DDX55Q8NHQ9 LEPR-204ENST00000371059 3079 ntTSL 1 (best) BASIC13.09□□□□□ -0.313e-11■□□□□ 9.2
Retrieved 100 of 15,504 protein–RNA pairs in 96.4 ms